Penn Image Computing and Science Laboratory

Publications

Publications by PICSL faculty, generated automatically from their ORCID records.

2026

3D mesh based wall thickness measurement: identification of left ventricular hypertrophy phenotypes.
3D mesh based wall thickness measurement: identification of left ventricular hypertrophy phenotypes.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference  ·  22 Oct 2026  ·  [no id info]
Clinicopathologic Evaluation of Amyloid Clearance in Alzheimer Disease
Clinicopathologic Evaluation of Amyloid Clearance in Alzheimer Disease
Christopher A. Brown, John L. Robinson, Sandhitsu R. Das, Emily McGrew, EunRan Suh, …, Ilya M. Nasrallah, Dawn Mechanic-Hamilton, Paul A. Yushkevich, David A. Wolk, Edward B. Lee
JAMA  ·  13 Oct 2026  ·  doi:10.1001/JAMA.2026.13058
SynthPET: A 3D generative AI approach for FDG PET image synthesis from T1 weighted MRI and ASL CBF in Alzheimer s disease
SynthPET: A 3D generative AI approach for FDG‐PET image synthesis from T1‐weighted MRI and ASL CBF in Alzheimer's disease
Xavier Beltran‐Urbano, Katie R. Jobson, Ilya M. Nasrallah, Ajay Kumar, Manuel Taso, …, Paul A. Yushkevich, Dave A. Wolk, Greg Zaharchuk, Sudipto Dolui, John A. Detre
Alzheimer's & Dementia  ·  01 Sep 2026  ·  doi:10.1002/ALZ.71822
Volumetric postmortem MRI of the medial temporal lobe in Alzheimer s disease and related disorders: methodological advances and implications for in vivo biomarker development
Volumetric postmortem MRI of the medial temporal lobe in Alzheimer’s disease and related disorders: methodological advances and implications for in vivo biomarker development
Yasmine Salman, Amanda E Denning, Jolien M Schaeverbeke, Sandra O Tomé, Nicolas Joudiou, …, Paul A Yushkevich, Rik Vandenberghe, Bernard Gallez, Laura EM Wisse, Bernard J Hanseeuw
NeuroImage  ·  01 Sep 2026  ·  doi:10.1016/j.neuroimage.2026.122098
Bridging Biomedical Atlas Ecosystem: Cross-Atlas Alignment And Scalable Tissue Specimen Registration
Bridging Biomedical Atlas Ecosystem: Cross-Atlas Alignment And Scalable Tissue Specimen Registration
Yashvardhan Jain, Bhargav Desai, Danial Qaurooni, Antara Bhavsar, Peter Kienle, …, Kathleen O’Neill, Siddharth Apte, Bruce W. Herr, Stephen A. Fisher, Katy Börner
openRxiv  ·  18 Aug 2026  ·  doi:10.64898/2026.08.13.744704
Adaptive hub reorganization distinguishes cognitive preservation from decline in epilepsy
Adaptive hub reorganization distinguishes cognitive preservation from decline in epilepsy
Tamjid Imtiaz, Alfredo Lucas, Emily Zhang, Mariam Josyula, Nina Petillo, …, Mallory Mckee, Joel M. Stein, Kathy A. Lawler, Sandhitsu Das, Kathryn A. Davis
openRxiv  ·  18 Aug 2026  ·  doi:10.64898/2026.08.17.26360463
LSDiff: Diffusion-Guided Level Set for Low-Contrast Lesion Boundary Segmentation
LSDiff: Diffusion-Guided Level Set for Low-Contrast Lesion Boundary Segmentation
Wenshuo Li, Wenhui Huang, Jing Wang, James C. Gee, Yuanjie Zheng
IEEE Transactions on Circuits and Systems for Video Technology  ·  01 Aug 2026  ·  doi:10.1109/TCSVT.2026.3682491
i Postmortem i brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies
Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies
Pulkit Khandelwal, Michael Tran Duong, Lisa M. Levorse, Winifred Trotman, Alejandra Bahena, …, M. Dylan Tisdall, David J. Irwin, Corey T. McMillan, David A. Wolk, Paul A. Yushkevich
Alzheimer's & Dementia  ·  01 Jul 2026  ·  doi:10.1002/ALZ.71649
Characterizing the MRI signature of hippocampal sclerosis of aging
Characterizing the MRI signature of hippocampal sclerosis of aging
Gustaf Rådman, Amanda E. Denning, Sadhana Ravikumar, Nicola Spotorno, Ranjit Ittyerah, …, Corey T. McMillan, Ricardo Insausti, David J. Irwin, Paul A. Yushkevich, Laura E. M. Wisse
Alzheimer's Research & Therapy  ·  22 Jun 2026  ·  doi:10.1186/S13195-026-02118-0
Cortical thickness in perirhinal area BA35 predicts adaptive episodic memory-guided decision making in older adults
Cortical thickness in perirhinal area BA35 predicts adaptive episodic memory-guided decision making in older adults
Karolina M Lempert, Michael S Cohen, Kameron A MacNear, Frances M Reckers, Laura Zaneski, Long Xie, Sandhitsu R Das, Paul A Yushkevich, David A Wolk, Joseph W Kable
The Journals of Gerontology, Series B: Psychological Sciences and Social Sciences  ·  22 Jun 2026  ·  doi:10.1093/geronb/gbag044
Adaptive Riemannian optimization for multi-scale diffeomorphic matching
Adaptive Riemannian optimization for multi-scale diffeomorphic matching
Rohit Jena, Pratik Chaudhari, James C. Gee
Nature Communications  ·  09 Jun 2026  ·  doi:10.1038/s41467-026-72508-3
Assessing subcortical, brainstem and cerebellar metabolic patterns using 18F FDG PET-CT imaging in dementia with Lewy bodies
Assessing subcortical, brainstem and cerebellar metabolic patterns using [18F]FDG PET-CT imaging in dementia with Lewy bodies
Daniël S. L. Loewenstein, Max van Grinsven, Cécile de Pont, Anne I. J. Arens, Paul L. J. Dautzenberg, …, V. Sotelo, Yaneicy Gonazalez Rojas, Jacobo Mintzer, Crystal Flynn Longmire, Kenneth Spicer
European Journal of Nuclear Medicine and Molecular Imaging  ·  08 Jun 2026  ·  doi:10.1007/S00259-026-07925-Z
Vulnerability of anterior medial temporal lobe subregions to early tau related neurodegeneration in Alzheimer s disease: Converging evidence from tau PET and plasma p tau217
Vulnerability of anterior medial temporal lobe subregions to early tau‐related neurodegeneration in Alzheimer's disease: Converging evidence from tau‐PET and plasma p‐tau217
Nidhi S. Mundada, Niyousha Sadeghpour, Emily McGrew, Hannah L. Tucker, Ilya M Nasrallah, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich, Christopher A Brown, Laura E. M. Wisse
Alzheimer's & Dementia  ·  01 Jun 2026  ·  doi:10.1002/ALZ.71571
Text-Image Co-Alignment for Weakly Supervised Polyp Segmentation
Text-Image Co-Alignment for Weakly Supervised Polyp Segmentation
Wenhui Huang, Zhen Pan, Xiaoyan Wang, Yedi Zhang, Jingzhen He, James C. Gee, Yuanjie Zheng
IEEE Transactions on Medical Imaging  ·  01 Jun 2026  ·  doi:10.1109/TMI.2026.3674592
Deep Computational Anatomy via Latent-Aligned Multiview Normalizing Flows
Deep Computational Anatomy via Latent-Aligned Multiview Normalizing Flows
Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, James C. Gee, James R. Stone
openRxiv  ·  10 May 2026  ·  doi:10.64898/2026.05.05.723039
High-resolution postmortem MRI of the human infant brain: cortical reconstruction and anatomical parcellation
High-resolution postmortem MRI of the human infant brain: cortical reconstruction and anatomical parcellation
Pulkit Khandelwal, Sala Young, Nathan Xi Ngo, Paul A. Yushkevich, Andre van der Kouwe, Robin L. Haynes, Hannah C. Kinney, Lilla Zollei
openRxiv  ·  09 May 2026  ·  doi:10.64898/2026.05.07.722301
Idiotypic-susceptible Alzheimer s disease: a clinically relevant, neurofibrillary tangle subtype
Idiotypic-susceptible Alzheimer’s disease: a clinically relevant, neurofibrillary tangle subtype
John L. Robinson, Helen Cai, Nicholas J. Loh, Omar Vazquez, Zahra Khodakaramimaghsoud, …, Daniel T. Ohm, David A. Wolk, David J. Irwin, Jeffrey S. Phillips, Edward B. Lee
Acta Neuropathologica  ·  02 May 2026  ·  doi:10.1007/S00401-026-03013-6
Uncovering distinct spatiotemporal trajectories of T N mismatch subtypes with likely co pathology in Alzheimer s disease using event based modeling
Uncovering distinct spatiotemporal trajectories of T‐N mismatch subtypes with likely co‐pathology in Alzheimer's disease using event‐based modeling
Xueying Lyu, Christopher A. Brown, Michael Tran Duong, Emma P. Fischer, Emily McGrew, …, Russell Takeshi Shinohara, Alexandra L. Young, Paul A. Yushkevich, Sandhitsu R. Das, David A. Wolk
Alzheimer's & Dementia  ·  01 May 2026  ·  doi:10.1002/ALZ.71474
Temporal Modeling of Amyloid and Tau Trajectories in Alzheimer s Disease Using scp PET scp and Plasma Biomarkers
Temporal Modeling of Amyloid and Tau Trajectories in Alzheimer's Disease Using PET and Plasma Biomarkers
Christopher A. Brown, Katheryn A.Q. Cousins, Magdalena Korecka, Emily McGrew, Alice Chen‐Plotkin, …, Dawn Mechanic‐Hamilton, Paul A. Yushkevich, Ilya M. Nasrallah, Leslie M. Shaw, David A. Wolk
Annals of Neurology  ·  15 Mar 2026  ·  doi:10.1002/ANA.78194
The In-Situ Mechanics of the Tricuspid Valve: Strain Heterogeneity and Anisotropy via 3D Digital Image Correlation
The In-Situ Mechanics of the Tricuspid Valve: Strain Heterogeneity and Anisotropy via 3D Digital Image Correlation
T. G. LaRue, C. E. Haese, A. M. Pouch, J. N. Fuhg, T. A. Timek, M. K. Rausch
Experimental Mechanics  ·  25 Feb 2026  ·  doi:10.1007/s11340-026-01273-7
Harmonized Protocol for Subfield Segmentation in the Hippocampal Body on High Resolution In Vivo scp MRI scp From the Hippocampal Subfields Group scp HSG scp
Harmonized Protocol for Subfield Segmentation in the Hippocampal Body on High‐Resolution In Vivo MRI From the Hippocampal Subfields Group ( HSG )
Ana M. Daugherty, Valerie Carr, Kelsey L. Canada, Gustaf Rådman, Thackery Brown, …, Lei Wang, Paul Yushkevich, Renaud La Joie, Laura Wisse, Rosanna Olsen
Hippocampus  ·  03 Feb 2026  ·  doi:10.1002/HIPO.70073
Evaluation of Copathology and Clinical Trajectories in Individuals With Tau-Clinical Mismatch
Evaluation of Copathology and Clinical Trajectories in Individuals With Tau-Clinical Mismatch
Christopher A. Brown, Nidhi S. Mundada, Katheryn A. Q. Cousins, Niyousha Sadeghpour, Xueying Lyu, …, Caitlin Webb, Michael Weiner, Trinity Weisensel, Paul A. Yushkevich, Caileigh Zimmerman
JAMA Neurology  ·  01 Feb 2026  ·  doi:10.1001/JAMANEUROL.2025.4974
Discordance of Dopaminergic Dysfunction and Subcortical Atrophy by α Synuclein Status in Sporadic and Genetic Parkinson s Disease
Discordance of Dopaminergic Dysfunction and Subcortical Atrophy by α‐Synuclein Status in Sporadic and Genetic Parkinson's Disease
Michael Tran Duong, Sandhitsu R. Das, Pulkit Khandelwal, Joaquin A. Vizcarra, Yue Li, …, Leslie M. Shaw, Jacob G. Dubroff, Andrew Siderowf, David A. Wolk, Ilya M. Nasrallah
Movement Disorders  ·  28 Jan 2026  ·  doi:10.1002/MDS.70186
A wireless, 60-channel, AI-enabled neurostimulation platform
A wireless, 60-channel, AI-enabled neurostimulation platform
Daniel S. Rizzuto, Haydn G. Herrema, Zhe Hu, Daniil Utin, Joshua Kahn, …, Andrew B. Smiles, Robert E. Gross, Bradley C. Lega, Sandhitsu R. Das, Michael J. Kahana
Brain Stimulation  ·  01 Jan 2026  ·  doi:10.1016/j.brs.2025.103013
Clinicoanatomic localization of iron-rich gliosis in aphasic presentations of globular glial tauopathy
Clinicoanatomic localization of iron-rich gliosis in aphasic presentations of globular glial tauopathy
David J Irwin, Sheina Emrani, Daniel T Ohm, Winifred Trotman, Alejandra Bahena, …, James C Gee, Edward B Lee, Paul Yushkevich, Corey T McMillan, M Dylan Tisdall
Brain Communications  ·  01 Jan 2026  ·  doi:10.1093/BRAINCOMMS/FCAG169
Spatial covariance of mGluR5 density and structural degeneration in behavioral variant frontotemporal degeneration
Spatial covariance of mGluR5 density and structural degeneration in behavioral variant frontotemporal degeneration
Melanie A. Matyi, Maggie K. Pecsok, Christopher A. Olm, Hamsanandini Radhakrishnan, Laynie Dratch, …, James C. Gee, David J. Irwin, Corey T. McMillan, David Roalf, Lauren Massimo
Imaging Neuroscience  ·  01 Jan 2026  ·  doi:10.1162/IMAG.a.1358

2025

Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies
Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies
Pulkit Khandelwal, Michael Tran Duong, Lisa M. Levorse, Winifred Trotman, Alejandra Bahena, …, M. Dylan Tisdall, David J. Irwin, Corey T. McMillan, David A. Wolk, Paul A. Yushkevich
openRxiv  ·  31 Dec 2025  ·  doi:10.64898/2025.12.30.697140
Hepatic and abdominal adiposity in type 2 diabetes as assessed with machine learning on CT scans
Hepatic and abdominal adiposity in type 2 diabetes as assessed with machine learning on CT scans
Richard H. Tran, Pavan Raghupathy, Mohamad Hazim, Elizabeth Thompson, Sophia Swago, …, Charles Kahn, Daniel J. Rader, Arijitt Borthakur, Walter R. Witschey, Hersh Sagreiya
openRxiv  ·  18 Dec 2025  ·  doi:10.64898/2025.12.16.25342409
Clinical correlates of perfusion and diffusion MRI metrics in cognitively unimpaired older adults
Clinical correlates of perfusion and diffusion MRI metrics in cognitively unimpaired older adults
Banafsheh Shakibajahromi, Sudipto Dolui, Christopher A Brown, Mohammad Taghvaei, Shokufeh Sadaghiani, …, Paul A Yushkevich, Ilya M Nasrallah, Sharon X Xie, David A Wolk, John A Detre
Journal of Cerebral Blood Flow & Metabolism  ·  07 Dec 2025  ·  doi:10.1177/0271678X251389043
Integrating individualized connectome with amyloid pathology improves predictive modeling of future cognitive decline
Integrating individualized connectome with amyloid pathology improves predictive modeling of future cognitive decline
Hengda He, Qolamreza R. Razlighi, Yunglin Gazes, Christian Habeck, Yaakov Stern, …, Carole Ho, Jonathan Jackson, Eliezer Masliah, Donna Masterman, Nina Silverberg
Communications Medicine  ·  05 Dec 2025  ·  doi:10.1038/S43856-025-01170-5
Microstructural and Water Exchange Alterations in ARIA E in a Real World Cohort Receiving Anti Amyloid Therapy
Microstructural and Water Exchange Alterations in ARIA‐E in a Real‐World Cohort Receiving Anti‐Amyloid Therapy
Christopher A Brown, Manuel Taso, Sandhitsu R. Das, Danielle Hing, Emily McGrew, …, Dawn Mechanic‐Hamilton, Ilya M. Nasrallah, David C Alsop, John A. Detre, David A. Wolk
Alzheimer's & Dementia  ·  01 Dec 2025  ·  doi:10.1002/ALZ70862_110130
Enrichment of patients with concomitant limbic predominant age related TDP 43 encephalopathy LATE on the Alzheimer s disease continuum using hippocampal volume
Enrichment of patients with concomitant limbic‐predominant age‐related TDP‐43 encephalopathy (LATE) on the Alzheimer's disease continuum using hippocampal volume
Nidhi S. Mundada, Xueying Lyu, Christopher A. Brown, Niyousha Sadeghpour, Emily McGrew, …, Philip A. Cook, James Gee, Paul A. Yushkevich, Sandhitsu R. Das, David A. Wolk
Alzheimer's & Dementia  ·  01 Dec 2025  ·  doi:10.1002/ALZ.70970
Enrichment of patients with concomitant LATE on the Alzheimer s disease continuum: comparing structural and cognitive trajectories
Enrichment of patients with concomitant LATE on the Alzheimer’s disease continuum: comparing structural and cognitive trajectories
Nidhi S. Mundada, Xueying Lyu, Niyousha Sadeghpour, Christopher D. Brown, Emily McGrew, Long Xie, Paul A. Yushkevich, Sandhitsu R. Das, David A. Wolk
Alzheimer's & Dementia  ·  01 Dec 2025  ·  doi:10.1002/ALZ70862_110000
Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications
Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications
Matthew Cieslak, M. Okan Irfanoglu, Steven L. Meisler, Taylor Salo, Adam Raikes, …, Bennett A. Landman, Jessica Wisnowski, Hao Huang, Andrew L. Alexander, Theodore D. Satterthwaite
openRxiv  ·  11 Nov 2025  ·  doi:10.1101/2025.11.10.687672
Geometric Aging of the Thoracic Aorta: Insights From 2 Large Cohorts
Geometric Aging of the Thoracic Aorta: Insights From 2 Large Cohorts
Cameron A. Beeche, Hamed Tavolinejad, Bingxin Zhao, Patrick Segers, Jeffrey T. Duda, James Gee, Walter R. Witschey, Julio A. Chirinos
Hypertension  ·  01 Nov 2025  ·  doi:10.1161/HYPERTENSIONAHA.125.25259
Automatic Segmentation of Medial Temporal Lobe Subregions in Multi Scanner, Multi Modality Magnetic Resonance Imaging of Variable Quality
Automatic Segmentation of Medial Temporal Lobe Subregions in Multi‐Scanner, Multi‐Modality Magnetic Resonance Imaging of Variable Quality
Yue Li, Long Xie, Pulkit Khandelwal, Laura E. M. Wisse, Christopher A. Brown, …, Dawn Mechanic‐Hamilton, John A. Detre, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich
Hippocampus  ·  07 Oct 2025  ·  doi:10.1002/HIPO.70036
Early Vascular Aging Determined by 3-Dimensional Aortic Geometry: Genetic Determinants and Clinical Consequences
Early Vascular Aging Determined by 3-Dimensional Aortic Geometry: Genetic Determinants and Clinical Consequences
Cameron Beeche, Bingxin Zhao, Hamed Tavolinejad, Bianca Pourmussa, Joonghyun Kim, Jeffrey Duda, James Gee, Walter R. Witschey, Julio A. Chirinos
Circulation  ·  16 Sep 2025  ·  doi:10.1161/CIRCULATIONAHA.125.074554
Biological age acceleration in Alzheimer s disease modulates relative cortical to medial temporal lobe neurodegeneration
Biological age acceleration in Alzheimer’s disease modulates relative cortical to medial temporal lobe neurodegeneration
Lasya P. Sreepada, Christopher A. Brown, Sandhitsu R. Das, Paul A. Yushkevich, David A. Wolk, Corey T. McMillan
Neurobiology of Aging  ·  01 Sep 2025  ·  doi:10.1016/J.NEUROBIOLAGING.2025.06.003
Medial temporal lobe Tau-Neurodegeneration i mismatch i from MRI and plasma biomarkers identifies vulnerable and resilient phenotypes with AD
Medial temporal lobe Tau-Neurodegeneration mismatch from MRI and plasma biomarkers identifies vulnerable and resilient phenotypes with AD
Xueying Lyu, Nidhi S Mundada, Christopher A. Brown, Niyousha Sadeghpour, Emily McGrew, …, Dawn Mechanic-Hamilton, L.E.M. Wisse, Paul A Yushkevich, Sandhitsu R Das, David A Wolk
openRxiv  ·  19 Aug 2025  ·  doi:10.1101/2025.08.17.25333859
Enrichment of patients with concomitant LATE on the Alzheimer s disease continuum using hippocampal volume
Enrichment of patients with concomitant LATE on the Alzheimer’s disease continuum using hippocampal volume
Nidhi S. Mundada, Xueying Lyu, Christopher A. Brown, Niyousha Sadeghpour, Emily McGrew, …, Philip A Cook, James Gee, Paul A. Yushkevich, Sandhitsu R. Das, David A. Wolk
openRxiv  ·  16 Aug 2025  ·  doi:10.1101/2025.08.14.25333712
Evaluating acute image ordering for real-world patient cases via language model alignment with radiological guidelines
Evaluating acute image ordering for real-world patient cases via language model alignment with radiological guidelines
Michael S. Yao, Allison Chae, Piya Saraiya, Charles E. Kahn, Walter R. Witschey, James C. Gee, Hersh Sagreiya, Osbert Bastani
Communications Medicine  ·  04 Aug 2025  ·  doi:10.1038/s43856-025-01061-9
Dynamic Segmentation of Three-Dimensional Transesophageal Echocardiography Using an Automated Neural Network for Transcatheter Edge-to-Edge Repair
Dynamic Segmentation of Three-Dimensional Transesophageal Echocardiography Using an Automated Neural Network for Transcatheter Edge-to-Edge Repair
Charlotte L. Frost, Mahesh Vidula, Ray Hu, Howard C. Herrmann, Alison M. Pouch, Tiffany Chen
Journal of the American Society of Echocardiography  ·  01 Aug 2025  ·  doi:10.1016/j.echo.2025.04.004
Developing an Anatomically Valid Segmentation Protocol for Anterior Regions of the Medial Temporal Lobe for Neurodegenerative Diseases
Developing an Anatomically Valid Segmentation Protocol for Anterior Regions of the Medial Temporal Lobe for Neurodegenerative Diseases
Niyousha Sadeghpour, Sydney A. Lim, Anika Wuestefeld, Amanda E. Denning, Ranjit Ittyerah, …, M. Dylan Tisdall, David J. Irwin, David A. Wolk, Paul A. Yushkevich, Laura E. M. Wisse
Hippocampus  ·  30 Jul 2025  ·  doi:10.1002/HIPO.70027
Improving the Detection of Mild Cognitive Impairment with FlowGAN: a Framework for ASL to FDG-PET Image Synthesis
Improving the Detection of Mild Cognitive Impairment with FlowGAN: a Framework for ASL to FDG-PET Image Synthesis
Chetan Vadali, Alfredo Lucas, T. Campbell Arnold, Sudipto Dolui, Sandhitsu Das, David A. Wolk, Kathryn A. Davis, Joel M. Stein, John A. Detre
openRxiv  ·  10 Jul 2025  ·  doi:10.1101/2025.07.08.25331145
Tau, atrophy, and domain specific cognitive impairment in typical Alzheimer s disease
Tau, atrophy, and domain‐specific cognitive impairment in typical Alzheimer's disease
Anika Wuestefeld, Long Xie, Emily McGrew, Alexa Pichet‐Binette, Nicola Spotorno, …, Niklas Mattsson‐Carlgren, Paul A. Yushkevich, Sandhitsu R. Das, David A. Wolk, Laura E. M. Wisse
Alzheimer's & Dementia  ·  01 Jul 2025  ·  doi:10.1002/alz.70511
Deep implicit optimization enables robust learnable features for deformable image registration
Deep implicit optimization enables robust learnable features for deformable image registration
Rohit Jena, Pratik Chaudhari, James C. Gee
Medical Image Analysis  ·  01 Jul 2025  ·  doi:10.1016/j.media.2025.103577
Functional Lung Imaging Using CT: An Update
Functional Lung Imaging Using CT: An Update
Changhyun Lee, Juergen Biederer, Yoshiharu Ohno, Joon Beom Seo, Grace Parraga, …, Rohit Jena, Yoshiyuki Ozawa, Mark O. Wielpuetz, Eric A. Hoffman, Edwin J. R. van Beek
Radiology: Cardiothoracic Imaging  ·  01 Jun 2025  ·  doi:10.1148/ryct.240505
Operationalizing postmortem pathology-MRI association studies in Alzheimer s disease and related disorders with MRI-guided histology sampling
Operationalizing postmortem pathology-MRI association studies in Alzheimer’s disease and related disorders with MRI-guided histology sampling
Chinmayee Athalye, Alejandra Bahena, Pulkit Khandelwal, Sheina Emrani, Winifred Trotman, …, M. Dylan Tisdall, Sandhitsu R. Das, David A. Wolk, David J. Irwin, Paul A. Yushkevich
Acta Neuropathologica Communications  ·  28 May 2025  ·  doi:10.1186/S40478-025-02030-Y
Medial temporal lobe atrophy in Down syndrome along the Alzheimer s disease continuum
Medial temporal lobe atrophy in Down syndrome along the Alzheimer’s disease continuum
Benjamin J Buehner, Alejandra O Morcillo-Nieto, Sara E Zsadanyi, Mateus Rozalem Aranha, José Enrique Arriola-Infante, …, Olivia Belbin, Alberto Lleó, Maria Carmona-Iragui, Juan Fortea, Alexandre Bejanin
Brain  ·  17 Apr 2025  ·  doi:10.1093/BRAIN/AWAF133
Effects of APOE Genotypes on Periventricular White Matter Cerebral Blood Flow in Cognitively Intact Adults P3-3.004
Effects of APOE Genotypes on Periventricular White Matter Cerebral Blood Flow in Cognitively Intact Adults (P3-3.004)
Shokufeh Sadaghiani, Mohammad Taghvaei, Sudipto Dolui, Banafsheh Shakibajahromi, Sandhitsu Das, Paul Yushkevich, David Wolk, John Detre
Neurology  ·  08 Apr 2025  ·  doi:10.1212/WNL.0000000000212429
Executive dysfunction relates to salience network desegregation in behavioral variant frontotemporal dementia
Executive dysfunction relates to salience network desegregation in behavioral variant frontotemporal dementia
Melanie A. Matyi, Hamsanandini Radhakrishnan, Christopher A. Olm, Jeffrey S. Phillips, Philip A. Cook, Emma Rhodes, James C. Gee, David J. Irwin, Corey T. McMillan, Lauren Massimo
openRxiv  ·  05 Mar 2025  ·  doi:10.1101/2025.03.04.25323383
Remembering Ricardo Serrano Insausti 1954 2024
Remembering Ricardo Serrano Insausti 1954–2024
Maria Carmen Lorduy, Ana María Insausti Serrano, Mónica Muñoz López, Laura Wisse, Paul A. Yushkevich, David G. Amaral
Hippocampus  ·  01 Mar 2025  ·  doi:10.1002/HIPO.70005
A wireless, 60-channel, AI-enabled neurostimulation platform
A wireless, 60-channel, AI-enabled neurostimulation platform
Daniel S. Rizzuto, Haydn G. Herrema, Zhe Hu, Daniel Utin, Joshua Kahn, …, Andrew Smiles, Robert E. Gross, Bradley C. Lega, Sandhitsu R. Das, Michael J. Kahana
openRxiv  ·  06 Feb 2025  ·  doi:10.1101/2025.02.04.635298
A multi cohort study of longitudinal and cross sectional Alzheimer s disease biomarkers in cognitively unimpaired older adults
A multi‐cohort study of longitudinal and cross‐sectional Alzheimer's disease biomarkers in cognitively unimpaired older adults
Long Xie, Sandhitsu R. Das, Yue Li, Laura E. M. Wisse, Emily McGrew, …, Stanislau Hrybouski, Robin de Flores, Eli Gibson, Paul A. Yushkevich, David A. Wolk
Alzheimer's & Dementia  ·  27 Jan 2025  ·  doi:10.1002/ALZ.14492
Tau Burden is Best Captured by Magnitude and Extent: Tau-MaX as a Measure of Global Tau
Tau Burden is Best Captured by Magnitude and Extent: Tau-MaX as a Measure of Global Tau
Christopher A. Brown, Sandhitsu R. Das, Katheryn A.Q. Cousins, Thomas F. Tropea, Alice-Chen Plotkin, …, Corey T. McMillan, Edward B. Lee, Leslie M. Shaw, Ilya M. Nasrallah, David A. Wolk
openRxiv  ·  14 Jan 2025  ·  doi:10.1101/2025.01.13.25320488
Fully automated segmentation of the locus coeruleus: application to assess the effects of age, sex and education
Fully automated segmentation of the locus coeruleus: application to assess the effects of age, sex and education
Robin de Flores, Tao Blanchard, Emilie Foyard, Mikaël Naveau, Nicolas Delcroix, Léa Chauveau, Brigitte Landeau, Denis Vivien, Paul A. Yushkevich, Gaël Chételat
openRxiv  ·  09 Jan 2025  ·  doi:10.1101/2025.01.08.25320149
Streamlining 4D Cardiac Image Workflows: Open-Source Tools for Segmentation, Registration, and Visualization
Streamlining 4D Cardiac Image Workflows: Open-Source Tools for Segmentation, Registration, and Visualization
Jilei Hao, Paul A. Yushkevich, Ningjun J. Dong, Silvani Amin, Zaiyang Guo, Natalie Yushkevich, Ankush Aggarwal, Alison M. Pouch
Lecture Notes in Computer Science  ·  01 Jan 2025  ·  doi:10.1007/978-3-031-94562-5_15
Posterior hippocampal sparing in Lewy body disorders with Alzheimer s copathology: An in vivo MRI study
Posterior hippocampal sparing in Lewy body disorders with Alzheimer’s copathology: An in vivo MRI study
Jesse S. Cohen, Jeffrey Phillips, Sandhitsu R. Das, Christopher A. Olm, Hamsanandini Radhakrishnan, …, David A. Wolk, Edward B. Lee, Daniel Weintraub, David J. Irwin, Corey T. McMillan
NeuroImage: Clinical  ·  01 Jan 2025  ·  doi:10.1016/J.NICL.2024.103714
Fully individualized models for cross-sectional and longitudinal network-based tau spread
Fully individualized models for cross-sectional and longitudinal network-based tau spread
Christopher A. Brown, Sandhitsu R. Das, John A. Detre, Ilya M. Nasrallah, Paul A. Yushkevich, Corey T. McMillan, David A. Wolk
Imaging Neuroscience  ·  01 Jan 2025  ·  doi:10.1162/IMAG.A.1053
Effective Structured Information Extraction from Chest Radiography Reports Using Open-Weights Large Language Models
Effective Structured Information Extraction from Chest Radiography Reports Using Open-Weights Large Language Models
James C. Gee, Michael S. Yao
Radiology  ·  01 Jan 2025  ·  doi:10.1148/radiol.243659

2024

Subject Level Segmentation Precision Weights for Volumetric Studies Involving Label Fusion
Subject‐Level Segmentation Precision Weights for Volumetric Studies Involving Label Fusion
Christina E. Chen, Sandhitsu R. Das, M. Dylan Tisdall, Fengling Hu, Andrew A. Chen, Paul A. Yushkevich, David A. Wolk, Russell T. Shinohara
Human Brain Mapping  ·  15 Dec 2024  ·  doi:10.1002/HBM.70082
Surface-Based Parcellation and Vertex-wise Analysis of Ultra High-resolution ex vivo 7 tesla MRI in Alzheimer s disease and related dementias
Surface-Based Parcellation and Vertex-wise Analysis of Ultra High-resolution ex vivo 7 tesla MRI in Alzheimer’s disease and related dementias
Pulkit Khandelwal, Michael Tran Duong, Lisa Levorse, Constanza Fuentes, Amanda E. Denning, …, Corey McMillan, M. Dylan Tisdall, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  06 Dec 2024  ·  doi:10.1007/978-3-031-78761-4_13
Regional cerebral blood flow reflects both neurodegeneration and microvascular integrity across the Alzheimer s continuum
Regional cerebral blood flow reflects both neurodegeneration and microvascular integrity across the Alzheimer's continuum
Mohammad Taghvaei, Sudipto Dolui, Shokufeh Sadaghiani, Banafsheh Shakibajahromi, Christopher Brown, …, Sharon X. Xie, Sandhitsu Das, Paul A. Yushkevich, David A. Wolk, John A. Detre
Alzheimer's & Dementia  ·  03 Dec 2024  ·  doi:10.1002/ALZ.14382
Hypometabolic mismatch with atrophy and tau pathology in mixed Alzheimer s and Lewy body disease
Hypometabolic mismatch with atrophy and tau pathology in mixed Alzheimer’s and Lewy body disease
Michael Tran Duong, Sandhitsu R Das, Pulkit Khandelwal, Xueying Lyu, Long Xie, …, Edward B Lee, Leslie M Shaw, Paul A Yushkevich, David A Wolk, Ilya M Nasrallah
Brain  ·  22 Nov 2024  ·  doi:10.1093/BRAIN/AWAE352
BOLD Amplitude Correlates of Preclinical Alzheimer s Disease
BOLD Amplitude Correlates of Preclinical Alzheimer’s Disease
Stanislau Hrybouski, Sandhitsu R. Das, Long Xie, Christopher A. Brown, Melissa Flamporis, Jacqueline Lane, Ilya M. Nasrallah, John A. Detre, Paul A. Yushkevich, David A. Wolk
openRxiv  ·  29 Oct 2024  ·  doi:10.1101/2024.10.27.24316243
A sub field guide to quality control in hippocampal subfield segmentation on high resolution scp T sub 2 sub scp weighted scp MRI scp
A (sub)field guide to quality control in hippocampal subfield segmentation on high‐resolution T 2 ‐weighted MRI
Kelsey L. Canada, Negar Mazloum‐Farzaghi, Gustaf Rådman, Jenna N. Adams, Arnold Bakker, …, Laura E. M. Wisse, Anika Wuestefeld, Paul A. Yushkevich, Rosanna K. Olsen, Ana M. Daugherty
Human Brain Mapping  ·  15 Oct 2024  ·  doi:10.1002/HBM.70004
Implementation and validation of face de identification de facing in ADNI4
Implementation and validation of face de‐identification (de‐facing) in ADNI4
Christopher G. Schwarz, Mark Choe, Stephanie Rossi, Sandhitsu R. Das, Ranjit Ittyerah, …, Michael W. Weiner, Clifford R. Jack, William J. Jagust, Paul A. Yushkevich, Duygu Tosun
Alzheimer's & Dementia  ·  11 Oct 2024  ·  doi:10.1002/ALZ.14303
Medial temporal lobe atrophy patterns in early-versus late-onset amnestic Alzheimer s disease
Medial temporal lobe atrophy patterns in early-versus late-onset amnestic Alzheimer’s disease
Anika Wuestefeld, Alexa Pichet Binette, Danielle van Westen, Olof Strandberg, Erik Stomrud, …, David Berron, Paul A. Yushkevich, Oskar Hansson, Nicola Spotorno, Laura E.M. Wisse
Alzheimer's Research & Therapy  ·  16 Sep 2024  ·  doi:10.1186/S13195-024-01571-Z
Morphometry of medial temporal lobe subregions using high resolution T2 weighted MRI in ADNI3: Why, how, and what s next
Morphometry of medial temporal lobe subregions using high‐resolution T2‐weighted MRI in ADNI3: Why, how, and what's next?
Paul A. Yushkevich, Ranjit Ittyerah, Yue Li, Amanda E. Denning, Niyousha Sadeghpour, …, Robin DeFlores, Christopher A. Brown, Laura E. M. Wisse, David A. Wolk, Sandhitsu R. Das
Alzheimer's & Dementia  ·  16 Sep 2024  ·  doi:10.1002/alz.14161
Overview of ADNI MRI
Overview of ADNI MRI
Clifford R. Jack, Arvin Arani, Bret J. Borowski, Dave M. Cash, Karen Crawford, …, Paul M. Thompson, Duygu Tosun, Paul A. Yushkevich, Chadwick P. Ward, Michael W. Weiner
Alzheimer's & Dementia  ·  11 Sep 2024  ·  doi:10.1002/ALZ.14166
Association of quantitative histopathology measurements with antemortem medial temporal lobe cortical thickness in the Alzheimer s disease continuum
Association of quantitative histopathology measurements with antemortem medial temporal lobe cortical thickness in the Alzheimer’s disease continuum
Amanda E. Denning, Ranjit Ittyerah, Lisa M. Levorse, Niyousha Sadeghpour, Chinmayee Athalye, …, Sandhitsu R. Das, David J. Irwin, Edward B. Lee, David A. Wolk, Paul A. Yushkevich
Acta Neuropathologica  ·  03 Sep 2024  ·  doi:10.1007/S00401-024-02789-9
Postmortem imaging reveals patterns of medial temporal lobe vulnerability to tau pathology in Alzheimer s disease
Postmortem imaging reveals patterns of medial temporal lobe vulnerability to tau pathology in Alzheimer’s disease
Sadhana Ravikumar, Amanda E. Denning, Sydney Lim, Eunice Chung, Niyousha Sadeghpour, …, Carlos de la Rosa Prieto, David J. Irwin, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich
Nature Communications  ·  05 Jun 2024  ·  doi:10.1038/S41467-024-49205-0
Enhancing the Diagnostic Utility of ASL Imaging in Temporal Lobe Epilepsy through FlowGAN: An ASL to PET Image Translation Framework
Enhancing the Diagnostic Utility of ASL Imaging in Temporal Lobe Epilepsy through FlowGAN: An ASL to PET Image Translation Framework
Alfredo Lucas, Chetan Vadali, Sofia Mouchtaris, T. Campbell Arnold, James J. Gugger, …, Sandhitsu Das, Jacob Dubroff, John A. Detre, Joel M. Stein, Kathryn A. Davis
openRxiv  ·  28 May 2024  ·  doi:10.1101/2024.05.28.24308027
Automatic segmentation of medial temporal lobe subregions in multi-scanner, multi-modality magnetic resonance imaging of variable quality
Automatic segmentation of medial temporal lobe subregions in multi-scanner, multi-modality magnetic resonance imaging of variable quality
Yue Li, Long Xie, Pulkit Khandelwal, Laura E. M. Wisse, Christopher A. Brown, …, Dawn Mechanic-Hamilton, John A. Detre, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich
openRxiv  ·  23 May 2024  ·  doi:10.1101/2024.05.21.595190
Medial temporal lobe gray matter microstructure in preclinical Alzheimer s disease
Medial temporal lobe gray matter microstructure in preclinical Alzheimer's disease
Christopher Brown, Sandhitsu Das, Long Xie, Ilya Nasrallah, John Detre, Alice Chen‐Plotkin, Leslie Shaw, Corey McMillan, Paul Yushkevich, David Wolk
Alzheimer's & Dementia  ·  15 May 2024  ·  doi:10.1002/ALZ.13832
Open-source graphical user interface for the creation of synthetic skeletons for medical image analysis
Open-source graphical user interface for the creation of synthetic skeletons for medical image analysis
Christian Herz, Nicolas Vergnet, Sijie Tian, Abdullah H. Aly, Matthew A. Jolley, …, Andras Lasso, Nadav Schwartz, Kathleen E. O’Neill, Paul A. Yushkevich, Alison M. Pouch
Journal of Medical Imaging  ·  14 May 2024  ·  doi:10.1117/1.JMI.11.3.036001
Automated deep learning segmentation of high-resolution 7 Tesla postmortem MRI for quantitative analysis of structure-pathology correlations in neurodegenerative diseases
Automated deep learning segmentation of high-resolution 7 Tesla postmortem MRI for quantitative analysis of structure-pathology correlations in neurodegenerative diseases
Pulkit Khandelwal, Michael Tran Duong, Shokufeh Sadaghiani, Sydney Lim, Amanda E. Denning, …, M. Dylan Tisdall, Sandhitsu R. Das, Laura E. M. Wisse, David A. Wolk, Paul A. Yushkevich
Imaging Neuroscience  ·  01 May 2024  ·  doi:10.1162/IMAG_A_00171
Impact of white matter hyperintensities on structural connectivity and cognition in cognitively intact ADNI participants
Impact of white matter hyperintensities on structural connectivity and cognition in cognitively intact ADNI participants
Mohammad Taghvaei, Dawn J. Mechanic-Hamilton, Shokufeh Sadaghiani, Banafsheh Shakibajahromi, Sudipto Dolui, …, Russell T. Shinohara, Paul Yushkevich, Danielle S. Bassett, David A. Wolk, John A. Detre
Neurobiology of Aging  ·  01 Mar 2024  ·  doi:10.1016/J.NEUROBIOLAGING.2023.10.012
Comparison of histological delineations of medial temporal lobe cortices by four independent neuroanatomy laboratories
Comparison of histological delineations of medial temporal lobe cortices by four independent neuroanatomy laboratories
Anika Wuestefeld, Hannah Baumeister, Jenna N. Adams, Robin de Flores, Carl J. Hodgetts, …, Song‐Lin Ding, Ricardo Insausti, Olga Kedo, David Berron, Laura E. M. Wisse
Hippocampus  ·  28 Feb 2024  ·  doi:10.1002/HIPO.23602
Diffusion scp MRI scp head motion correction methods are highly accurate but impacted by denoising and sampling scheme
Diffusion MRI head motion correction methods are highly accurate but impacted by denoising and sampling scheme
Matthew Cieslak, Philip A. Cook, Golia Shafiei, Tinashe M. Tapera, Hamsanandini Radhakrishnan, …, Dani S. Bassett, M. Dylan Tisdall, Ariel Rokem, Scott T. Grafton, Theodore D. Satterthwaite
Human Brain Mapping  ·  30 Jan 2024  ·  doi:10.1002/hbm.26570
Correction: Baseline structural MRI and plasma biomarkers predict longitudinal structural atrophy and cognitive decline in early Alzheimer s disease
Correction: Baseline structural MRI and plasma biomarkers predict longitudinal structural atrophy and cognitive decline in early Alzheimer’s disease
Long Xie, Sandhitsu R. Das, Laura E. M. Wisse, Ranjit Ittyerah, Robin de Flores, Leslie M. Shaw, Paul A. Yushkevich, David A. Wolk
Alzheimer's Research & Therapy  ·  12 Jan 2024  ·  doi:10.1186/S13195-023-01374-8
Regional deep atrophy: Using temporal information to automatically identify regions associated with Alzheimer s disease progression from longitudinal MRI
Regional deep atrophy: Using temporal information to automatically identify regions associated with Alzheimer’s disease progression from longitudinal MRI
Mengjin Dong, Long Xie, Sandhitsu R. Das, Jiancong Wang, Laura E.M. Wisse, Robin deFlores, David A. Wolk, Paul A. Yushkevich
Imaging Neuroscience  ·  01 Jan 2024  ·  doi:10.1162/IMAG_A_00294
Beyond Macrostructure: Is There a Role for Radiomics Analysis in Neuroimaging
Beyond Macrostructure: Is There a Role for Radiomics Analysis in Neuroimaging ?
Sandhitsu R. Das, Ademola Ilesanmi, David A. Wolk, James C. Gee
Magnetic Resonance in Medical Sciences  ·  01 Jan 2024  ·  doi:10.2463/mrms.rev.2024-0053

2023

Tau neurodegeneration i mismatch i reveals vulnerability and resilience to comorbidities in Alzheimer s continuum
Tau‐neurodegeneration mismatch reveals vulnerability and resilience to comorbidities in Alzheimer's continuum
Xueying Lyu, Michael Tran Duong, Long Xie, Robin de Flores, Hayley Richardson, …, Christos Davatzikos, Ilya M. Nasrallah, Paul A. Yushkevich, David A. Wolk, Sandhitsu R. Das
Alzheimer's & Dementia  ·  05 Dec 2023  ·  doi:10.1002/ALZ.13559
A Sub field Guide to Quality Control in Hippocampal Subfield Segmentation on High-resolution T sub 2 sub -weighted MRI
A (Sub)field Guide to Quality Control in Hippocampal Subfield Segmentation on High-resolution T 2 -weighted MRI
K.L. Canada, N. Mazloum-Farzaghi, G. Rådman, J.N. Adams, A. Bakker, …, L.E.M. Wisse, A. Wuestefeld, P.A. Yushkevich, R.K. Olsen, A.M. Daugherty
openRxiv  ·  01 Dec 2023  ·  doi:10.1101/2023.11.29.568895
Neuroanatomical and cellular degeneration associated with a social disorder characterized by new ritualistic belief systems in a TDP-C patient vs. a Pick patient
Neuroanatomical and cellular degeneration associated with a social disorder characterized by new ritualistic belief systems in a TDP-C patient vs. a Pick patient
Daniel T. Ohm, Emma Rhodes, Alejandra Bahena, Noah Capp, MaKayla Lowe, …, M. Dylan Tisdall, Paul A. Yushkevich, Edward B. Lee, Murray Grossman, David J. Irwin
Frontiers in Neurology  ·  11 Oct 2023  ·  doi:10.3389/FNEUR.2023.1245886
Association of Sleep-Disordered Breathing and Medial Temporal Lobe Atrophy in Cognitively Unimpaired Amyloid-Positive Older Adults
Association of Sleep-Disordered Breathing and Medial Temporal Lobe Atrophy in Cognitively Unimpaired Amyloid-Positive Older Adults
Claire André, Elizabeth Kuhn, Stéphane Rehel, Valentin Ourry, Solène Demeilliez-Servouin, …, Denis Vivien, Vincent de La Sayette, Gaël Chételat, Robin de Flores, Géraldine Rauchs
Neurology  ·  25 Jul 2023  ·  doi:10.1212/WNL.0000000000207421
Strain estimation in aortic roots from 4D echocardiographic images using medial modeling and deformable registration
Strain estimation in aortic roots from 4D echocardiographic images using medial modeling and deformable registration
Ankush Aggarwal, Peter Mortensen, Jilei Hao, Łukasz Kaczmarczyk, Albert T. Cheung, Lourdes Al Ghofaily, Robert C. Gorman, Nimesh D. Desai, Joseph E. Bavaria, Alison M. Pouch
Medical Image Analysis  ·  01 Jul 2023  ·  doi:10.1016/j.media.2023.102804
Improved Seizure Onset-Zone Lateralization in Temporal Lobe Epilepsy using 7T Resting-State fMRI: A Direct Comparison with 3T
Improved Seizure Onset-Zone Lateralization in Temporal Lobe Epilepsy using 7T Resting-State fMRI: A Direct Comparison with 3T
Alfredo Lucas, Eli J. Cornblath, Nishant Sinha, Lorenzo Caciagli, Peter Hadar, Ashley Tranquille, Joel M. Stein, Sandhitsu Das, Kathryn A. Davis
openRxiv  ·  07 Jun 2023  ·  doi:10.1101/2023.06.06.23291025
Young versus older subject diffusion magnetic resonance imaging data for virtual white matter lesion tractography
Young versus older subject diffusion magnetic resonance imaging data for virtual white matter lesion tractography
Mohammad Taghvaei, Philip Cook, Shokufeh Sadaghiani, Banafsheh Shakibajahromi, William Tackett, …, Pulkit Khandelwal, Paul Yushkevich, Sandhitsu Das, David A. Wolk, John A. Detre
Human Brain Mapping  ·  06 May 2023  ·  doi:10.1002/HBM.26326
Prediction of Regional Tau Spread Using Individualized Tau Epicenters and Structural Connectomes S39.002
Prediction of Regional Tau Spread Using Individualized Tau Epicenters and Structural Connectomes (S39.002)
Christopher Brown, Sandhitsu Das, Ilya Nasrallah, John Detre, Paul Yushkevich, Corey McMillan, David Wolk
Neurology  ·  25 Apr 2023  ·  doi:10.1212/WNL.0000000000203911
Periventricular White Matter Fractional Anisotropy as a Biomarker of Cerebral Small Vessel Disease P11-6.007
Periventricular White Matter Fractional Anisotropy as a Biomarker of Cerebral Small Vessel Disease (P11-6.007)
Banafsheh Shakibajahromi, Sudipto Dolui, Christopher Brown, William Tackett, Pulkit Khandelwal, Shokufeh Sadaghiani, Mohammad Taghvaei, Paul Yushkevich, David Wolk, John Detre
Neurology  ·  25 Apr 2023  ·  doi:10.1212/WNL.0000000000202552
Baseline structural MRI and plasma biomarkers predict longitudinal structural atrophy and cognitive decline in early Alzheimer s disease
Baseline structural MRI and plasma biomarkers predict longitudinal structural atrophy and cognitive decline in early Alzheimer’s disease
Long Xie, Sandhitsu R. Das, Laura E. M. Wisse, Ranjit Ittyerah, Robin de Flores, Leslie M. Shaw, Paul A. Yushkevich, David A. Wolk
Alzheimer's Research & Therapy  ·  11 Apr 2023  ·  doi:10.1186/S13195-023-01210-Z
Craniofacial Soft-Tissue Anthropomorphic Database with Magnetic Resonance Imaging and Unbiased Diffeomorphic Registration
Craniofacial Soft-Tissue Anthropomorphic Database with Magnetic Resonance Imaging and Unbiased Diffeomorphic Registration
Dillan F. Villavisanis, Pulkit Khandelwal, Zachary D. Zapatero, Connor S. Wagner, Jessica D. Blum, Daniel Y. Cho, Jordan W. Swanson, Jesse A. Taylor, Paul A. Yushkevich, Scott P. Bartlett
Plastic & Reconstructive Surgery  ·  11 Apr 2023  ·  doi:10.1097/PRS.0000000000010526
Integrating color deconvolution thresholding and weakly supervised learning for automated segmentation of neurofibrillary tangle and neuropil threads
Integrating color deconvolution thresholding and weakly supervised learning for automated segmentation of neurofibrillary tangle and neuropil threads
Hyung Seok Roh, David J. Irwin, Mónica Muñoz López, Maria Mercedes Iñiguez de Onzoño Martin, Ranjit Ittyerah, …, David A. Wolk, James C. Gee, Ricardo Insausti, Paul A. Yushkevich, Min Chen
Medical Imaging 2023: Digital and Computational Pathology  ·  07 Apr 2023  ·  doi:10.1117/12.2651848
Ex vivo, in situ perfusion protocol for human brain fixation compatible with microscopy, MRI techniques, and anatomical studies
Ex vivo, in situ perfusion protocol for human brain fixation compatible with microscopy, MRI techniques, and anatomical studies
Ricardo Insausti, Ana María Insausti, Mónica Muñoz López, Isidro Medina Lorenzo, Maria del Mar Arroyo-Jiménez, …, Sadhana Ravikumar, David A. Wolk, Javier DeFelipe, Paul Yushkevich, Emilio Artacho-Pérula
Frontiers in Neuroanatomy  ·  23 Mar 2023  ·  doi:10.3389/FNANA.2023.1149674
Tau-Neurodegeneration i mismatch i reveals vulnerability and resilience to comorbidities in Alzheimer s continuum
Tau-Neurodegeneration mismatch reveals vulnerability and resilience to comorbidities in Alzheimer’s continuum
Xueying Lyu, Michael Tran Duong, Long Xie, Robin de Flores, Hayley Richardson, …, Christos Davatzikos, Ilya M. Nasrallah, Paul A. Yushkevich, David A. Wolk, Sandhitsu R. Das
openRxiv  ·  15 Feb 2023  ·  doi:10.1101/2023.02.12.23285594
Development of White Matter Fiber Covariance Networks Supports Executive Function in Youth
Development of White Matter Fiber Covariance Networks Supports Executive Function in Youth
Joëlle Bagautdinova, Josiane Bourque, Valerie J Sydnor, Matt Cieslak, Aaron F Alexander-Bloch, …, Tinashe M Tapera, Chenying Zhao, Aristeidis Sotiras, Christos Davatzikos, Theodore D Satterthwaite
openRxiv  ·  10 Feb 2023  ·  doi:10.1101/2023.02.09.527696
Stress-related reduction of hippocampal subfield volumes in major depressive disorder: A 7-Tesla study
Stress-related reduction of hippocampal subfield volumes in major depressive disorder: A 7-Tesla study
Judy Alper, Rui Feng, Gaurav Verma, Sarah Rutter, Kuang-han Huang, …, Lazar Fleysher, Bradley N. Delman, Patrick R. Hof, James W. Murrough, Priti Balchandani
Frontiers in Psychiatry  ·  02 Feb 2023  ·  doi:10.3389/FPSYT.2023.1060770
Aging and Alzheimer s Disease Have Dissociable Effects on Medial Temporal Lobe Connectivity
Aging and Alzheimer’s Disease Have Dissociable Effects on Medial Temporal Lobe Connectivity
Stanislau Hrybouski, Sandhitsu R. Das, Long Xie, Laura E. M. Wisse, Melissa Kelley, …, Michael DiCalogero, Ilya Nasrallah, John A. Detre, Paul A. Yushkevich, David A. Wolk
openRxiv  ·  19 Jan 2023  ·  doi:10.1101/2023.01.18.23284749
ANTsX neuroimaging-derived structural phenotypes of UK Biobank
ANTsX neuroimaging-derived structural phenotypes of UK Biobank
Nicholas J. Tustison, Michael A. Yassa, Batool Rizvi, Philip A. Cook, Andrew J. Holbrook, Mithra T. Sathishkumar, Mia G. Tustison, James C. Gee, James R. Stone, Brian B. Avants
openRxiv  ·  18 Jan 2023  ·  doi:10.1101/2023.01.17.23284693
Improved Segmentation of Deep Sulci in Cortical Gray Matter Using a Deep Learning Framework Incorporating Laplace s Equation
Improved Segmentation of Deep Sulci in Cortical Gray Matter Using a Deep Learning Framework Incorporating Laplace’s Equation
Sadhana Ravikumar, Ranjit Ittyerah, Sydney Lim, Long Xie, Sandhitsu Das, …, Carlos de la Rosa-Prieto, Marta Córcoles Parada, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2023  ·  doi:10.1007/978-3-031-34048-2_53
Image-to-Image Translation Between Tau Pathology and Neuronal Metabolism PET in Alzheimer Disease with Multi-domain Contrastive Learning
Image-to-Image Translation Between Tau Pathology and Neuronal Metabolism PET in Alzheimer Disease with Multi-domain Contrastive Learning
Michael Tran Duong, Sandhitsu R. Das, Pulkit Khandelwal, Xueying Lyu, Long Xie, Paul A. Yushkevich, David A. Wolk, Ilya M. Nasrallah
Lecture Notes in Computer Science  ·  01 Jan 2023  ·  doi:10.1007/978-3-031-44858-4_1
Deep label fusion: A generalizable hybrid multi-atlas and deep convolutional neural network for medical image segmentation
Deep label fusion: A generalizable hybrid multi-atlas and deep convolutional neural network for medical image segmentation
Long Xie, Laura E.M. Wisse, Jiancong Wang, Sadhana Ravikumar, Pulkit Khandelwal, Trevor Glenn, Anica Luther, Sydney Lim, David A. Wolk, Paul A. Yushkevich
Medical Image Analysis  ·  01 Jan 2023  ·  doi:10.1016/J.MEDIA.2022.102683
Aging and Alzheimer s disease have dissociable effects on local and regional medial temporal lobe connectivity
Aging and Alzheimer’s disease have dissociable effects on local and regional medial temporal lobe connectivity
Stanislau Hrybouski, Sandhitsu R Das, Long Xie, Laura E M Wisse, Melissa Kelley, …, Michael DiCalogero, Ilya Nasrallah, John Detre, Paul A Yushkevich, David A Wolk
Brain Communications  ·  01 Jan 2023  ·  doi:10.1093/BRAINCOMMS/FCAD245
SynthA1c: Towards Clinically Interpretable Patient Representations for Diabetes Risk Stratification
SynthA1c: Towards Clinically Interpretable Patient Representations for Diabetes Risk Stratification
Michael S. Yao, Allison Chae, Matthew T. MacLean, Anurag Verma, Jeffrey Duda, …, Drew A. Torigian, Daniel Rader, Charles E. Kahn, Walter R. Witschey, Hersh Sagreiya
Lecture Notes in Computer Science  ·  01 Jan 2023  ·  doi:10.1007/978-3-031-46005-0_5

2022

Associations of phosphorylated tau pathology with whole hemisphere ex vivo morphometry in 7 tesla MRI
Associations of phosphorylated tau pathology with whole‐hemisphere ex vivo morphometry in 7 tesla MRI
Shokufeh Sadaghiani, Winifred Trotman, Sydney A. Lim, Eunice Chung, Ranjit Ittyerah, …, M. Dylan Tisdall, Laura E. M. Wisse, David J. Irwin, David A. Wolk, Paul A. Yushkevich
Alzheimer's & Dementia  ·  04 Dec 2022  ·  doi:10.1002/ALZ.12884
Fully Automated Placental Volume Quantification From 3D Ultrasound for Prediction of Small-for-Gestational-Age Infants
Fully Automated Placental Volume Quantification From 3D Ultrasound for Prediction of Small-for-Gestational-Age Infants
Nadav Schwartz, Ipek Oguz, Jiancong Wang, Alison Pouch, Natalie Yushkevich, Shobhana Parameshwaran, James Gee, Paul Yushkevich, Baris Oguz
Obstetrical & Gynecological Survey  ·  01 Dec 2022  ·  doi:10.1097/01.OGX.0000905268.90327.EA
Neuropsychological and Neuroanatomical Features of Patients with Behavioral Dysexecutive Variant Alzheimer s Disease AD : A Comparison to Behavioral Variant Frontotemporal Dementia and Amnestic AD Groups
Neuropsychological and Neuroanatomical Features of Patients with Behavioral/Dysexecutive Variant Alzheimer’s Disease (AD): A Comparison to Behavioral Variant Frontotemporal Dementia and Amnestic AD Groups
Sophia Dominguez Perez, Jeffrey S. Phillips, Catherine Norise, Nikolas G. Kinney, Prerana Vaddi, …, Laura E.M. Wisse, Paul A. Yushkevich, Dorina Kallogjeri, Murray Grossman, Katheryn A.Q. Cousins
Journal of Alzheimer's Disease  ·  13 Sep 2022  ·  doi:10.3233/JAD-215728
Fully Automated 3D Segmentation and Diffeomorphic Medial Modeling of the Left Ventricle Mitral Valve Complex in Ischemic Mitral Regurgitation
Fully Automated 3D Segmentation and Diffeomorphic Medial Modeling of the Left Ventricle Mitral Valve Complex in Ischemic Mitral Regurgitation
Ahmed H. Aly, Pulkit Khandelwal, Abdullah H. Aly, Takayuki Kawashima, Kazuki Mori, …, Judy Hung, Joseph H. Gorman, Alison M. Pouch, Robert C. Gorman, Paul A. Yushkevich
Medical Image Analysis  ·  01 Aug 2022  ·  doi:10.1016/J.MEDIA.2022.102513
Regional distribution and maturation of tau pathology among phenotypic variants of Alzheimer s disease
Regional distribution and maturation of tau pathology among phenotypic variants of Alzheimer’s disease
Sanaz Arezoumandan, Sharon X. Xie, Katheryn A. Q. Cousins, Dawn J. Mechanic-Hamilton, Claire S. Peterson, …, John Q. Trojanowski, Edward B. Lee, Murray Grossman, Jeffrey S. Phillips, David J. Irwin
Acta Neuropathologica  ·  23 Jul 2022  ·  doi:10.1007/S00401-022-02472-X
Self- and Partner-Reported Subjective Memory Complaints: Association with Objective Cognitive Impairment and Risk of Decline
Self- and Partner-Reported Subjective Memory Complaints: Association with Objective Cognitive Impairment and Risk of Decline
Leah Zuroff, Laura EM Wisse, Trevor Glenn, Sharon X. Xie, Ilya M. Nasrallah, …, Thomas F. Tropea, Alice S. Chen-Plotkin, David A Wolk, Sandhitsu Das, Dawn Mechanic-Hamilton
Journal of Alzheimer's Disease Reports  ·  11 Jul 2022  ·  doi:10.3233/ADR-220013
Automated Analysis of Low-Field Brain MRI in Cerebral Malaria
Automated Analysis of Low-Field Brain MRI in Cerebral Malaria
Danni Tu, Manu S. Goyal, Jordan D. Dworkin, Samuel Kampondeni, Lorenna Vidal, …, Nicholas J. Tustison, Douglas G. Postels, Terrie E. Taylor, Dylan S. Small, Russell T. Shinohara
Biometrics  ·  22 Jun 2022  ·  doi:10.1111/BIOM.13708
NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration
NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration
Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, M. Ani Hsieh, James C. Gee
2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)  ·  01 Jun 2022  ·  doi:10.1109/CVPR52688.2022.02014
Intuitive, localized analysis of shape variability
Intuitive, localized analysis of shape variability
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)  ·  26 May 2022  ·  [no id info]
Feature selection for shape-based classification of biological objects.
Feature selection for shape-based classification of biological objects.
Information processing in medical imaging : proceedings of the ... conference  ·  26 May 2022  ·  [no id info]
Towards diffusion profile image registration
Towards diffusion profile image registration
2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano  ·  26 May 2022  ·  [no id info]
Statistical modeling of shape and appearance using the continuous medial representation.
Statistical modeling of shape and appearance using the continuous medial representation.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Parametric medial shape representation in 3-D via the Poisson partial differential equation with non-linear boundary conditions.
Parametric medial shape representation in 3-D via the Poisson partial differential equation with non-linear boundary conditions.
Information processing in medical imaging : proceedings of the ... conference  ·  26 May 2022  ·  [no id info]
Deformable registration of diffusion tensor MR images with explicit orientation optimization.
Deformable registration of diffusion tensor MR images with explicit orientation optimization.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
An automated approach to connectivity-based partitioning of brain structures.
An automated approach to connectivity-based partitioning of brain structures.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Hippocampus-specific fMRI group activation analysis with continuous M-Reps.
Hippocampus-specific fMRI group activation analysis with continuous M-Reps.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Unbiased white matter atlas construction using diffusion tensor images.
Unbiased white matter atlas construction using diffusion tensor images.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Evaluation of shape-based normalization in the corpus callosum for white matter connectivity analysis.
Evaluation of shape-based normalization in the corpus callosum for white matter connectivity analysis.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Shape-based alignment of hippocampal subfields: evaluation in postmortem MRI.
Shape-based alignment of hippocampal subfields: evaluation in postmortem MRI.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Cardiac medial modeling and time-course heart wall thickness analysis.
Cardiac medial modeling and time-course heart wall thickness analysis.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
3D cerebral cortical morphometry in autism: increased folding in children and adolescents in frontal, parietal, and temporal lobes.
3D cerebral cortical morphometry in autism: increased folding in children and adolescents in frontal, parietal, and temporal lobes.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Tensor-based morphometry of fibrous structures with application to human brain white matter.
Tensor-based morphometry of fibrous structures with application to human brain white matter.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Multivariate high-dimensional cortical folding analysis, combining complexity and shape, in neonates with congenital heart disease.
Multivariate high-dimensional cortical folding analysis, combining complexity and shape, in neonates with congenital heart disease.
Information processing in medical imaging : proceedings of the ... conference  ·  26 May 2022  ·  [no id info]
Gender differences in cerebral cortical folding: multivariate complexity-shape analysis with insights into handling brain-volume differences.
Gender differences in cerebral cortical folding: multivariate complexity-shape analysis with insights into handling brain-volume differences.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features.
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Standing on the shoulders of giants: improving medical image segmentation via bias correction.
Standing on the shoulders of giants: improving medical image segmentation via bias correction.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Automatic cardiac MRI segmentation using a biventricular deformable medial model.
Automatic cardiac MRI segmentation using a biventricular deformable medial model.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Optimal weights for multi-atlas label fusion.
Optimal weights for multi-atlas label fusion.
Information processing in medical imaging : proceedings of the ... conference  ·  26 May 2022  ·  [no id info]
Guiding automatic segmentation with multiple manual segmentations.
Guiding automatic segmentation with multiple manual segmentations.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Multi-atlas segmentation without registration: a supervoxel-based approach.
Multi-atlas segmentation without registration: a supervoxel-based approach.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Multi-atlas segmentation with robust label transfer and label fusion.
Multi-atlas segmentation with robust label transfer and label fusion.
Information processing in medical imaging : proceedings of the ... conference  ·  26 May 2022  ·  [no id info]
Groupwise segmentation with multi-atlas joint label fusion.
Groupwise segmentation with multi-atlas joint label fusion.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Deformable modeling using a 3D boundary representation with quadratic constraints on the branching structure of the Blum skeleton.
Deformable modeling using a 3D boundary representation with quadratic constraints on the branching structure of the Blum skeleton.
Information processing in medical imaging : proceedings of the ... conference  ·  26 May 2022  ·  [no id info]
Automated segmentation and geometrical modeling of the tricuspid aortic valve in 3D echocardiographic images.
Automated segmentation and geometrical modeling of the tricuspid aortic valve in 3D echocardiographic images.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Automatic clustering and thickness measurement of anatomical variants of the human perirhinal cortex.
Automatic clustering and thickness measurement of anatomical variants of the human perirhinal cortex.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention  ·  26 May 2022  ·  [no id info]
Phases of volume loss in patients with known frontotemporal lobar degeneration spectrum pathology
Phases of volume loss in patients with known frontotemporal lobar degeneration spectrum pathology
Sarah E. Burke, Jeffrey S. Phillips, Christopher A. Olm, Claire S. Peterson, Phillip A. Cook, …, Edward B. Lee, John Q. Trojanowski, Lauren Massimo, David J. Irwin, Murray Grossman
Neurobiology of Aging  ·  01 May 2022  ·  doi:10.1016/j.neurobiolaging.2022.02.007
Dissociation of tau pathology and neuronal hypometabolism within the ATN framework of Alzheimer s disease
Dissociation of tau pathology and neuronal hypometabolism within the ATN framework of Alzheimer’s disease
Michael Tran Duong, Sandhitsu R. Das, Xueying Lyu, Long Xie, Hayley Richardson, …, Amanda Smith, Kristin Fargher, Balebail Ashok Raj, David A. Wolk, Ilya M. Nasrallah
Nature Communications  ·  21 Mar 2022  ·  doi:10.1038/S41467-022-28941-1
Automatic Segmentation of Bone Selective MR Images for Visualization and Craniometry of the Cranial Vault
Automatic Segmentation of Bone Selective MR Images for Visualization and Craniometry of the Cranial Vault
Carrie E. Zimmerman, Pulkit Khandelwal, Long Xie, Hyunyeol Lee, Hee Kwon Song, Paul A. Yushkevich, Arastoo Vossough, Scott P. Bartlett, Felix W. Wehrli
Academic Radiology  ·  01 Mar 2022  ·  doi:10.1016/J.ACRA.2021.03.010
Medial Temporal Lobe Networks in Alzheimer s Disease: Structural and Molecular Vulnerabilities
Medial Temporal Lobe Networks in Alzheimer's Disease: Structural and Molecular Vulnerabilities
Robin de Flores, Sandhitsu R. Das, Long Xie, Laura E. M. Wisse, Xueying Lyu, Preya Shah, Paul A. Yushkevich, David A. Wolk
The Journal of Neuroscience  ·  27 Jan 2022  ·  doi:10.1523/JNEUROSCI.0949-21.2021
Tau pathology mediates age effects on medial temporal lobe structure
Tau pathology mediates age effects on medial temporal lobe structure
Laura EM Wisse, Long Xie, Sandhitsu R Das, Robin de Flores, Oskar Hansson, Mohamad Habes, Jimit Doshi, Christos Davatzikos, Paul A Yushkevich, David A Wolk
Neurobiology of Aging  ·  01 Jan 2022  ·  doi:10.1016/J.NEUROBIOLAGING.2021.09.017
Ex vivo MRI and histopathology detect novel iron-rich cortical inflammation in frontotemporal lobar degeneration with tau versus TDP-43 pathology
Ex vivo MRI and histopathology detect novel iron-rich cortical inflammation in frontotemporal lobar degeneration with tau versus TDP-43 pathology
M. Dylan Tisdall, Daniel T. Ohm, Rebecca Lobrovich, Sandhitsu R. Das, Gabor Mizsei, …, Edward B. Lee, John A. Detre, Paul Yushkevich, Murray Grossman, David J. Irwin
NeuroImage: Clinical  ·  01 Jan 2022  ·  doi:10.1016/J.NICL.2021.102913

2021

DeepAtrophy: Teaching a neural network to detect progressive changes in longitudinal MRI of the hippocampal region in Alzheimer s disease
DeepAtrophy: Teaching a neural network to detect progressive changes in longitudinal MRI of the hippocampal region in Alzheimer's disease
Mengjin Dong, Long Xie, Sandhitsu R. Das, Jiancong Wang, Laura E.M. Wisse, Robin deFlores, David A. Wolk, Paul A. Yushkevich
NeuroImage  ·  01 Nov 2021  ·  doi:10.1016/J.NEUROIMAGE.2021.118514
Ex vivo MRI atlas of the human medial temporal lobe: characterizing neurodegeneration due to tau pathology
Ex vivo MRI atlas of the human medial temporal lobe: characterizing neurodegeneration due to tau pathology
Sadhana Ravikumar, Laura E. M. Wisse, Sydney Lim, Ranjit Ittyerah, Long Xie, …, Marta Córcoles Parada, David J. Irwin, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich
Acta Neuropathologica Communications  ·  24 Oct 2021  ·  doi:10.1186/S40478-021-01275-7
Tau Atrophy Variability Reveals Phenotypic Heterogeneity in Alzheimer s Disease
Tau‐Atrophy Variability Reveals Phenotypic Heterogeneity in Alzheimer's Disease
Sandhitsu R. Das, Xueying Lyu, Michael Tran Duong, Long Xie, Lauren McCollum, …, David J. Irwin, Bradford C. Dickerson, Ilya M. Nasrallah, Paul A. Yushkevich, David A. Wolk
Annals of Neurology  ·  15 Oct 2021  ·  doi:10.1002/ana.26233
Tau Atrophy Variability Reveals Phenotypic Heterogeneity in Alzheimer s Disease
Tau‐Atrophy Variability Reveals Phenotypic Heterogeneity in Alzheimer's Disease
Sandhitsu R. Das, Xueying Lyu, Michael Tran Duong, Long Xie, Lauren McCollum, …, David J. Irwin, Bradford C. Dickerson, Ilya M. Nasrallah, Paul A. Yushkevich, David A. Wolk
Annals of Neurology  ·  15 Oct 2021  ·  doi:10.1002/ANA.26233
Fully Automated Placental Volume Quantification From scp 3D scp Ultrasound for Prediction of Small for Gestational Age Infants
Fully Automated Placental Volume Quantification From3DUltrasound for Prediction of Small‐for‐Gestational‐Age Infants
Nadav Schwartz, Ipek Oguz, Jiancong Wang, Alison Pouch, Natalie Yushkevich, Shobhana Parameshwaran, James Gee, Paul Yushkevich, Baris Oguz
Journal of Ultrasound in Medicine  ·  23 Sep 2021  ·  doi:10.1002/JUM.15835
Sensitive Measures of Cognition in Mild Cognitive Impairment
Sensitive Measures of Cognition in Mild Cognitive Impairment
Nathaniel Klooster, Stacey Humphries, Eileen Cardillo, Franziska Hartung, Long Xie, …, Paul Yushkevich, Arun Pilania, Jieqiong Wang, David A. Wolk, Anjan Chatterjee
Journal of Alzheimer's Disease  ·  03 Aug 2021  ·  doi:10.3233/JAD-201280
Downstream effects of polypathology on neurodegeneration of medial temporal lobe subregions
Downstream effects of polypathology on neurodegeneration of medial temporal lobe subregions
L. E. M. Wisse, S. Ravikumar, R. Ittyerah, S. Lim, J. Lane, …, M. Córcoles Parada, D. A. Wolk, D. J. Irwin, R. Insausti, P. A. Yushkevich
Acta Neuropathologica Communications  ·  21 Jul 2021  ·  doi:10.1186/S40478-021-01225-3
Three-dimensional mapping of neurofibrillary tangle burden in the human medial temporal lobe
Three-dimensional mapping of neurofibrillary tangle burden in the human medial temporal lobe
Paul A Yushkevich, Mónica Muñoz López, María Mercedes Iñiguez de Onzoño Martin, Ranjit Ittyerah, Sydney Lim, …, Daniel T Ohm, Laura E M Wisse, David A Wolk, David J Irwin, Ricardo Insausti
Brain  ·  14 Jul 2021  ·  doi:10.1093/BRAIN/AWAB262
Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas
Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas
Katy Börner, Sarah A. Teichmann, Ellen M. Quardokus, James Gee, Kristen Browne, …, Maigan Brusko, Sujin Lee, Rajeev Malhotra, Sanjay Jain, Griffin Weber
openRxiv  ·  01 Jun 2021  ·  doi:10.1101/2021.05.31.446440
Pathological drivers of neurodegeneration in suspected non-Alzheimer s disease pathophysiology
Pathological drivers of neurodegeneration in suspected non-Alzheimer’s disease pathophysiology
L. E. M. Wisse, R. de Flores, L. Xie, S. R. Das, C. T. McMillan, …, M. Grossman, E. B. Lee, D. Irwin, P. A. Yushkevich, D. A. Wolk
Alzheimer's Research & Therapy  ·  14 May 2021  ·  doi:10.1186/S13195-021-00835-2
Early stages of tau pathology and its associations with functional connectivity, atrophy and memory
Early stages of tau pathology and its associations with functional connectivity, atrophy and memory
David Berron, Jacob W Vogel, Philip S Insel, Joana B Pereira, Long Xie, …, Niklas Mattsson-Carlgren, Erik Stomrud, Ruben Smith, Olof Strandberg, Oskar Hansson
Brain  ·  16 Mar 2021  ·  doi:10.1093/BRAIN/AWAB114
Multimodal image analysis and subvalvular dynamics in ischemic mitral regurgitation
Multimodal image analysis and subvalvular dynamics in ischemic mitral regurgitation
Ahmed H. Aly, Yoshiaki Saito, Wobbe Bouma, James J. Pilla, Alison M. Pouch, Paul A. Yushkevich, Matthew J. Gillespie, Joseph H. Gorman, Robert C. Gorman
JTCVS Open  ·  01 Mar 2021  ·  doi:10.1016/J.XJON.2020.10.007
Accurate and Robust Alignment of Differently Stained Histologic Images Based on Greedy Diffeomorphic Registration
Accurate and Robust Alignment of Differently Stained Histologic Images Based on Greedy Diffeomorphic Registration
Ludovic Venet, Sarthak Pati, Michael D. Feldman, MacLean P. Nasrallah, Paul Yushkevich, Spyridon Bakas
Applied Sciences  ·  21 Feb 2021  ·  doi:10.3390/APP11041892
Cross-sectional and longitudinal medial temporal lobe subregional atrophy patterns in semantic variant primary progressive aphasia
Cross-sectional and longitudinal medial temporal lobe subregional atrophy patterns in semantic variant primary progressive aphasia
Laura E.M. Wisse, Molly B. Ungrady, Ranjit Ittyerah, Sydney A. Lim, Paul A. Yushkevich, David A. Wolk, David J. Irwin, Sandhitsu R. Das, Murray Grossman
Neurobiology of Aging  ·  01 Feb 2021  ·  doi:10.1016/J.NEUROBIOLAGING.2020.11.012
3D Mapping of Neurofibrillary Tangle Burden in the Human Medial Temporal Lobe
3D Mapping of Neurofibrillary Tangle Burden in the Human Medial Temporal Lobe
Paul A Yushkevich, Mónica Muñoz López, Maria Mercedes Iñiguez de Onzoño Martin, Ranjit Ittyerah, Sydney Lim, …, Daniel T. Ohm, Laura E.M. Wisse, David A. Wolk, David J. Irwin, Ricardo Insausti
openRxiv  ·  17 Jan 2021  ·  doi:10.1101/2021.01.15.421909
Unfolding the Medial Temporal Lobe Cortex to Characterize Neurodegeneration Due to Alzheimer s Disease Pathology Using Ex vivo Imaging
Unfolding the Medial Temporal Lobe Cortex to Characterize Neurodegeneration Due to Alzheimer’s Disease Pathology Using Ex vivo Imaging
Sadhana Ravikumar, Laura Wisse, Sydney Lim, David Irwin, Ranjit Ittyerah, …, Carlos de la Rosa Prieto, Marta Córcoles Parada, David Wolk, Ricardo Insausti, Paul Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2021  ·  doi:10.1007/978-3-030-87586-2_1
Oh brother, where art tau Amyloid, neurodegeneration, and cognitive decline without elevated tau
Oh brother, where art tau? Amyloid, neurodegeneration, and cognitive decline without elevated tau
Lauren E. McCollum, Sandhitsu R. Das, Long Xie, Robin de Flores, Jieqiong Wang, Sharon X. Xie, Laura E.M. Wisse, Paul A. Yushkevich, David A. Wolk
NeuroImage: Clinical  ·  01 Jan 2021  ·  doi:10.1016/J.NICL.2021.102717
Deep Label Fusion: A 3D End-To-End Hybrid Multi-atlas Segmentation and Deep Learning Pipeline
Deep Label Fusion: A 3D End-To-End Hybrid Multi-atlas Segmentation and Deep Learning Pipeline
Long Xie, Laura E. M. Wisse, Jiancong Wang, Sadhana Ravikumar, Trevor Glenn, Anica Luther, Sydney Lim, David A. Wolk, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2021  ·  doi:10.1007/978-3-030-78191-0_33

2020

Multi-institutional noninvasive in vivo characterization of i IDH i , 1p 19q, and EGFRvIII in glioma using neuro-Cancer Imaging Phenomics Toolkit neuro-CaPTk
Multi-institutional noninvasive in vivo characterization of IDH, 1p/19q, and EGFRvIII in glioma using neuro-Cancer Imaging Phenomics Toolkit (neuro-CaPTk)
Saima Rathore, Suyash Mohan, Spyridon Bakas, Chiharu Sako, Chaitra Badve, …, Andrew E Sloan, Despina Kontos, MacLean P Nasrallah, Jill S Barnholtz-Sloan, Christos Davatzikos
Neuro-Oncology Advances  ·  01 Dec 2020  ·  doi:10.1093/NOAJNL/VDAA128
Remote effects of temporal lobe epilepsy surgery: long-term morphological changes after surgical resection
Remote effects of temporal lobe epilepsy surgery: long-term morphological changes after surgical resection
T. Campbell Arnold, Lohith G. Kini, John M. Bernabei, Andrew Y. Revell, Sandhitsu R. Das, …, Tim H. Lucas, Dario J. Englot, Victoria L. Morgan, Brian Litt, Kathryn A. Davis
openRxiv  ·  06 Nov 2020  ·  doi:10.1101/2020.11.05.20224873
The ANTsX ecosystem for quantitative biological and medical imaging
The ANTsX ecosystem for quantitative biological and medical imaging
Nicholas J. Tustison, Philip A. Cook, Andrew J. Holbrook, Hans J. Johnson, John Muschelli, …, Daniel L. Gillen, Michael A. Yassa, James R. Stone, James C. Gee, Brian B. Avants
openRxiv  ·  21 Oct 2020  ·  doi:10.1101/2020.10.19.20215392
Hippocampal subfield volumetry from structural isotropic 1 mm sup 3 sup scp MRI scp scans: A note of caution
Hippocampal subfield volumetry from structural isotropic 1 mm3MRI scans: A note of caution
Laura E. M. Wisse, Gaël Chételat, Ana M. Daugherty, Robin de Flores, Renaud la Joie, …, David Berron, Naftali Raz, Arnold Bakker, Rosanna K. Olsen, Valerie A. Carr
Human Brain Mapping  ·  15 Oct 2020  ·  doi:10.1002/HBM.25234
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge
Jiri Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, …, Yan Xu, Yan Yan, Paul Yushkevich, Shengyu Zhao, Arrate Munoz-Barrutia
IEEE Transactions on Medical Imaging  ·  01 Oct 2020  ·  doi:10.1109/TMI.2020.2986331
Hippocampal subfield pathologic burden in Lewy body diseases i vs i . Alzheimer s disease
Hippocampal subfield pathologic burden in Lewy body diseases vs. Alzheimer’s disease
D. G. Coughlin, R. Ittyerah, C. Peterson, J. S. Phillips, S. Miller, …, P. A. Yushkevich, M. Grossman, E. B. Lee, J. Q. Trojanowski, D. J. Irwin
Neuropathology and Applied Neurobiology  ·  24 Sep 2020  ·  doi:10.1111/NAN.12659
Neural and behavioral correlates of episodic memory are associated with temporal discounting in older adults
Neural and behavioral correlates of episodic memory are associated with temporal discounting in older adults
Karolina M. Lempert, Dawn J. Mechanic-Hamilton, Long Xie, Laura E.M. Wisse, Robin de Flores, Jieqiong Wang, Sandhitsu R. Das, Paul A. Yushkevich, David A. Wolk, Joseph W. Kable
Neuropsychologia  ·  01 Sep 2020  ·  doi:10.1016/J.NEUROPSYCHOLOGIA.2020.107549
Longitudinal atrophy in early Braak regions in preclinical Alzheimer s disease
Longitudinal atrophy in early Braak regions in preclinical Alzheimer's disease
Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Nicolas Vergnet, Mengjin Dong, Ranjit Ittyerah, Robin de Flores, Paul A. Yushkevich, David A. Wolk
Human Brain Mapping  ·  26 Aug 2020  ·  doi:10.1002/HBM.25151
In Vivo Image-Based 4D Modeling of Competent and Regurgitant Mitral Valve Dynamics
In Vivo Image-Based 4D Modeling of Competent and Regurgitant Mitral Valve Dynamics
A. H. Aly, A. H. Aly, E. K. Lai, N. Yushkevich, R. H. Stoffers, …, A. T. Cheung, J. H. Gorman, R. C. Gorman, P. A. Yushkevich, A. M. Pouch
Experimental Mechanics  ·  17 Aug 2020  ·  doi:10.1007/S11340-020-00656-8
Intraoperative post-annuloplasty three-dimensional valve analysis does not predict recurrent ischemic mitral regurgitation
Intraoperative post-annuloplasty three-dimensional valve analysis does not predict recurrent ischemic mitral regurgitation
Frank Meijerink, Inez J. Wijdh-den Hamer, Wobbe Bouma, Alison M. Pouch, Ahmed H. Aly, …, Kamal R. Khabbaz, Thomas G. Gleason, Feroze Mahmood, Joseph H. Gorman, Robert C. Gorman
Journal of Cardiothoracic Surgery  ·  02 Jul 2020  ·  doi:10.1186/S13019-020-01138-7
Contribution of mixed pathology to medial temporal lobe atrophy in Alzheimer s disease
Contribution of mixed pathology to medial temporal lobe atrophy in Alzheimer's disease
Robin de Flores, Laura E.M. Wisse, Sandhitsu R. Das, Long Xie, Corey T. McMillan, …, Murray Grossman, Edward Lee, David J. Irwin, Paul A. Yushkevich, David A. Wolk
Alzheimer's & Dementia  ·  22 Apr 2020  ·  doi:10.1002/ALZ.12079
Building an Ex Vivo Atlas of the Earliest Brain Regions Affected by Alzheimer s Disease Pathology
Building an Ex Vivo Atlas of the Earliest Brain Regions Affected by Alzheimer's Disease Pathology
Sadhana Ravikumar, Laura E. M. Wisse, Ranjit Ittyerah, Sydney Lim, Madigan Lavery, …, David J. Irwin, John Q. Trojanowski, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)  ·  01 Apr 2020  ·  doi:10.1109/ISBI45749.2020.9098427
Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound
Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound
Alison M. Pouch, Paul A. Yushkevich, Abdullah H. Aly, Alexander H.F. Woltersom, Edidiong Okon, …, Jiancong Wang, Baris Oguz, C. James Gee, Ipek Oguz, Nadav Schwartz
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)  ·  01 Apr 2020  ·  doi:10.1109/ISBI45749.2020.9098428
3D Mapping of TAU Neurofibrillary Tangle Pathology in the Human Medial Temporal Lobe
3D Mapping of TAU Neurofibrillary Tangle Pathology in the Human Medial Temporal Lobe
Paul A. Yushkevich, Maria Mercedes Iniguez de Onzono Martin, Ranjit Ittyerah, Sydney Lim, Madigan Lavery, …, John Q. Trojanowski, Laura E.M. Wisse, David A. Wolk, David J. Irwin, Ricardo Insausti
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)  ·  01 Apr 2020  ·  doi:10.1109/ISBI45749.2020.9098462
Minimally interactive placenta segmentation from three-dimensional ultrasound images
Minimally interactive placenta segmentation from three-dimensional ultrasound images
Ipek Oguz, Natalie Yushkevich, Alison M. Pouch, Baris U. Oguz, Jiancong Wang, Shobhana Parameshwaran, James C. Gee, Paul A. Yushkevich, Nadav Schwartz
Journal of Medical Imaging  ·  22 Feb 2020  ·  doi:10.1117/1.JMI.7.1.014004
The Cancer Imaging Phenomics Toolkit CaPTk : Technical Overview
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview
Sarthak Pati, Ashish Singh, Saima Rathore, Aimilia Gastounioti, Mark Bergman, …, Paul Yushkevich, Yong Fan, Despina Kontos, Christos Davatzikos, Spyridon Bakas
Lecture Notes in Computer Science  ·  01 Jan 2020  ·  doi:10.1007/978-3-030-46643-5_38
TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis
TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis
Alessandra M. Valcarcel, John Muschelli, Dzung L. Pham, Melissa Lynne Martin, Paul Yushkevich, …, Kristina R. Patterson, Matthew K. Schindler, Peter A. Calabresi, Rohit Bakshi, Russell T. Shinohara
NeuroImage: Clinical  ·  01 Jan 2020  ·  doi:10.1016/J.NICL.2020.102256
Domain Generalizer: A Few-Shot Meta Learning Framework for Domain Generalization in Medical Imaging
Domain Generalizer: A Few-Shot Meta Learning Framework for Domain Generalization in Medical Imaging
Pulkit Khandelwal, Paul Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2020  ·  doi:10.1007/978-3-030-60548-3_8

2019

Longitudinal ComBat: A Method for Harmonizing Longitudinal Multi-scanner Imaging Data
Longitudinal ComBat: A Method for Harmonizing Longitudinal Multi-scanner Imaging Data
Joanne C. Beer, Nicholas J. Tustison, Philip A. Cook, Christos Davatzikos, Yvette I. Sheline, Russell T. Shinohara, Kristin A. Linn
openRxiv  ·  08 Dec 2019  ·  doi:10.1101/868810
Quantitative three dimensional echocardiographic analysis of the bicuspid aortic valve and aortic root: A single modality approach
Quantitative three‐dimensional echocardiographic analysis of the bicuspid aortic valve and aortic root: A single modality approach
Melissa M. Levack, Gianclaudio Mecozzi, Jayant S. Jainandunsing, Wobbe Bouma, Arminder S. Jassar, …, Paul A. Yushkevich, Massimo A. Mariani, Benjamin M. Jackson, Joseph H. Gorman, Robert C. Gorman
Journal of Cardiac Surgery  ·  03 Dec 2019  ·  doi:10.1111/JOCS.14387
Characterization of hippocampal subfields using ex vivo MRI and histology data: Lessons for in vivo segmentation
Characterization of hippocampal subfields using ex vivo MRI and histology data: Lessons for in vivo segmentation
Robin de Flores, David Berron, Song‐Lin Ding, Ranjit Ittyerah, John B. Pluta, …, Stephen Pickup, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich, Laura E. M. Wisse
Hippocampus  ·  01 Nov 2019  ·  doi:10.1002/HIPO.23172
Longitudinal Changes in Hippocampal Subfield Volume Associated with Collegiate Football
Longitudinal Changes in Hippocampal Subfield Volume Associated with Collegiate Football
Sherveen N. Parivash, Maged Goubran, Brian D. Mills, Paymon Rezaii, Christian Thaler, …, Jarrett Rosenberg, David Camarillo, Gerald Grant, Max Wintermark, Michael Zeineh
Journal of Neurotrauma  ·  10 Sep 2019  ·  doi:10.1089/NEU.2018.6357
In vivo measures of tau burden are associated with atrophy in early Braak stage medial temporal lobe regions in amyloid negative individuals
In vivo measures of tau burden are associated with atrophy in early Braak stage medial temporal lobe regions in amyloid‐negative individuals
Sandhitsu R. Das, Long Xie, Laura E.M. Wisse, Nicolas Vergnet, Ranjit Ittyerah, Salena Cui, Paul A. Yushkevich, David A. Wolk
Alzheimer's & Dementia  ·  06 Sep 2019  ·  doi:10.1016/J.JALZ.2019.05.009
Convolutional Neural Network for Automated FLAIR Lesion Segmentation on Clinical Brain MR Imaging
Convolutional Neural Network for Automated FLAIR Lesion Segmentation on Clinical Brain MR Imaging
M.T. Duong, J.D. Rudie, J. Wang, L. Xie, S. Mohan, J.C. Gee, A.M. Rauschecker
American Journal of Neuroradiology  ·  25 Jul 2019  ·  doi:10.3174/ajnr.A6138
Progress update from the hippocampal subfields group
Progress update from the hippocampal subfields group
Rosanna K. Olsen, Valerie A. Carr, Ana M. Daugherty, Renaud La Joie, Robert S.C. Amaral, …, Lei Wang, Markus Werkle‐Bergner, Paul A. Yushkevich, Qijing Yu, Laura E.M. Wisse
Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring  ·  13 Jun 2019  ·  doi:10.1016/J.DADM.2019.04.001
PC234. Automated Image Analysis to Determine Local Wall Strain of Abdominal Aortic Aneurysms
PC234. Automated Image Analysis to Determine Local Wall Strain of Abdominal Aortic Aneurysms
Amey Vrudhula, Ahmed Aly, Paul Yushkevich, Alison Pouch, Eric Shang, Robert Gorman, Joseph Gorman, Benjamin M. Jackson
Journal of Vascular Surgery  ·  01 Jun 2019  ·  doi:10.1016/J.JVS.2019.04.410
Automated segmentation of medial temporal lobe subregions on in vivo T1 weighted MRI in early stages of Alzheimer s disease
Automated segmentation of medial temporal lobe subregions on in vivo T1‐weighted MRI in early stages of Alzheimer's disease
Long Xie, Laura E. M. Wisse, John Pluta, Robin de Flores, Virgine Piskin, …, Hongzhi Wang, Sandhitsu R. Das, Song‐Lin Ding, David A. Wolk, Paul A. Yushkevich
Human Brain Mapping  ·  29 Apr 2019  ·  doi:10.1002/HBM.24607
Structural and functional asymmetry of medial temporal subregions in unilateral temporal lobe epilepsy: A 7T MRI study
Structural and functional asymmetry of medial temporal subregions in unilateral temporal lobe epilepsy: A 7T MRI study
Preya Shah, Danielle S. Bassett, Laura E.M. Wisse, John A. Detre, Joel M. Stein, Paul A. Yushkevich, Russell T. Shinohara, Mark A. Elliott, Sandhitsu R. Das, Kathryn A. Davis
Human Brain Mapping  ·  21 Jan 2019  ·  doi:10.1002/HBM.24530
Improving Multi-atlas Segmentation by Convolutional Neural Network Based Patch Error Estimation
Improving Multi-atlas Segmentation by Convolutional Neural Network Based Patch Error Estimation
Long Xie, Jiancong Wang, Mengjin Dong, David A. Wolk, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2019  ·  doi:10.1007/978-3-030-32248-9_39
1049: Fully automated placental volume quantification from 3DUS for prediction of small-for-gestational age infants
1049: Fully automated placental volume quantification from 3DUS for prediction of small-for-gestational age infants
Nadav Schwartz, Ipek Oguz, Jiancong Wang, Alison Pouch, Natalie Yushkevich, Shobhana Parameshwaran, James Gee, Paul Yushkevich, Baris U. Oguz
American Journal of Obstetrics and Gynecology  ·  01 Jan 2019  ·  doi:10.1016/J.AJOG.2018.11.1073
Diffeomorphic Medial Modeling
Diffeomorphic Medial Modeling
Paul A. Yushkevich, Ahmed Aly, Jiancong Wang, Long Xie, Robert C. Gorman, Laurent Younes, Alison M. Pouch
Lecture Notes in Computer Science  ·  01 Jan 2019  ·  doi:10.1007/978-3-030-20351-1_16

2018

Associative memory for conceptually unitized word pairs in mild cognitive impairment is related to the volume of the perirhinal cortex
Associative memory for conceptually unitized word pairs in mild cognitive impairment is related to the volume of the perirhinal cortex
Emma Delhaye, Dawn Mechanic‐Hamilton, Laura Saad, Sandhitsu R. Das, Laura E. M. Wisse, Paul A. Yushkevich, David A. Wolk, Christine Bastin
Hippocampus  ·  26 Dec 2018  ·  doi:10.1002/HIPO.23063
Task enhanced arterial spin labeled perfusion MRI predicts longitudinal neurodegeneration in mild cognitive impairment
Task‐enhanced arterial spin labeled perfusion MRI predicts longitudinal neurodegeneration in mild cognitive impairment
Long Xie, Sandhitsu R. Das, Arun Pilania, Molly Daffner, Grace E. Stockbower, Sudipto Dolui, Paul A. Yushkevich, John A. Detre, David A. Wolk
Hippocampus  ·  06 Nov 2018  ·  doi:10.1002/HIPO.23026
A noninvasive method for the determination of i in vivo i mitral valve leaflet strains
A noninvasive method for the determination ofin vivomitral valve leaflet strains
Bruno V. Rego, Amir H. Khalighi, Andrew Drach, Eric K. Lai, Alison M. Pouch, Robert C. Gorman, Joseph H. Gorman, Michael S. Sacks
International Journal for Numerical Methods in Biomedical Engineering  ·  14 Sep 2018  ·  doi:10.1002/cnm.3142
Quantitative MRI of Perivascular Spaces at 3T for Early Diagnosis of Mild Cognitive Impairment
Quantitative MRI of Perivascular Spaces at 3T for Early Diagnosis of Mild Cognitive Impairment
M. Niazi, M. Karaman, S. Das, X.J. Zhou, P. Yushkevich, K. Cai
American Journal of Neuroradiology  ·  09 Aug 2018  ·  doi:10.3174/ajnr.A5734
Quantitative MRI of Perivascular Spaces at 3T for Early Diagnosis of Mild Cognitive Impairment
Quantitative MRI of Perivascular Spaces at 3T for Early Diagnosis of Mild Cognitive Impairment
M. Niazi, M. Karaman, S. Das, X.J. Zhou, P. Yushkevich, K. Cai
American Journal of Neuroradiology  ·  09 Aug 2018  ·  doi:10.3174/AJNR.A5734
User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP
User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP
Paul A. Yushkevich, Artem Pashchinskiy, Ipek Oguz, Suyash Mohan, J. Eric Schmitt, …, Matthew McCormick, Natalie Yushkevich, Nadav Schwartz, Yang Gao, Guido Gerig
Neuroinformatics  ·  27 Jun 2018  ·  doi:10.1007/S12021-018-9385-X
Longitudinal and cross-sectional structural magnetic resonance imaging correlates of AV-1451 uptake
Longitudinal and cross-sectional structural magnetic resonance imaging correlates of AV-1451 uptake
Sandhitsu R. Das, Long Xie, Laura E.M. Wisse, Ranjit Ittyerah, Nicholas J. Tustison, Bradford C. Dickerson, Paul A. Yushkevich, David A. Wolk
Neurobiology of Aging  ·  01 Jun 2018  ·  doi:10.1016/J.NEUROBIOLAGING.2018.01.024
Automated Multi-Atlas Segmentation of Hippocampal and Extrahippocampal Subregions in Alzheimer s Disease at 3T and 7T: What Atlas Composition Works Best
Automated Multi-Atlas Segmentation of Hippocampal and Extrahippocampal Subregions in Alzheimer’s Disease at 3T and 7T: What Atlas Composition Works Best?
Long Xie, Russell T. Shinohara, Ranjit Ittyerah, Hugo J. Kuijf, John B. Pluta, …, Sandhitsu R. Das, Geert Jan Biessels, David A. Wolk, Paul A. Yushkevich, Laura E.M. Wisse
Journal of Alzheimer's Disease  ·  10 Apr 2018  ·  doi:10.3233/JAD-170932
Characterizing the human hippocampus in aging and Alzheimer s disease using a computational atlas derived from ex vivo MRI and histology
Characterizing the human hippocampus in aging and Alzheimer’s disease using a computational atlas derived from ex vivo MRI and histology
Daniel H. Adler, Laura E. M. Wisse, Ranjit Ittyerah, John B. Pluta, Song-Lin Ding, …, Stephen Pickup, Michael I. Miller, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich
Proceedings of the National Academy of Sciences  ·  28 Mar 2018  ·  doi:10.1073/PNAS.1801093115
Diminished Cortical Thickness Is Associated with Impulsive Choice in Adolescence
Diminished Cortical Thickness Is Associated with Impulsive Choice in Adolescence
Marieta Pehlivanova, Daniel H. Wolf, Aristeidis Sotiras, Antonia N. Kaczkurkin, Tyler M. Moore, …, Ruben C. Gur, Christos Davatzikos, Raquel E. Gur, Joseph W. Kable, Theodore D. Satterthwaite
The Journal of Neuroscience  ·  12 Feb 2018  ·  doi:10.1523/JNEUROSCI.2200-17.2018
Early Tau Burden Correlates with Higher Rate of Atrophy in Transentorhinal Cortex
Early Tau Burden Correlates with Higher Rate of Atrophy in Transentorhinal Cortex
Long Xie, Sandhitsu R. Das, Laura E.M. Wisse, Ranjit Ittyerah, Paul A. Yushkevich, David A. Wolk
Journal of Alzheimer’s Disease  ·  06 Feb 2018  ·  doi:10.3233/JAD-170945
Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome
Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome
Christos Davatzikos, Saima Rathore, Spyridon Bakas, Sarthak Pati, Mark Bergman, …, Yong Fan, Russell T. Shinohara, Paul Yushkevich, Ragini Verma, Despina Kontos
Journal of Medical Imaging  ·  11 Jan 2018  ·  doi:10.1117/1.JMI.5.1.011018
Systematic comparison of different techniques to measure hippocampal subfield volumes in ADNI2
Systematic comparison of different techniques to measure hippocampal subfield volumes in ADNI2
Susanne G. Mueller, Paul A. Yushkevich, Sandhitsu Das, Lei Wang, Koen Van Leemput, …, Kate Alpert, Adam Mezher, Peter Ng, Katrina Paz, Michael W. Weiner
NeuroImage: Clinical  ·  01 Jan 2018  ·  doi:10.1016/J.NICL.2017.12.036
Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation
Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation
Greg M. Fleishman, Alessandra Valcarcel, Dzung L. Pham, Snehashis Roy, Peter A. Calabresi, Paul Yushkevich, Russell T. Shinohara, Ipek Oguz
Lecture Notes in Computer Science  ·  01 Jan 2018  ·  doi:10.1007/978-3-319-75238-9_4
Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation
Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation
Ipek Oguz, Aaron Carass, Dzung L. Pham, Snehashis Roy, Nagesh Subbana, Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, Jerry L. Prince
Lecture Notes in Computer Science  ·  01 Jan 2018  ·  doi:10.1007/978-3-319-75238-9_1
Defining SNAP by cross-sectional and longitudinal definitions of neurodegeneration
Defining SNAP by cross-sectional and longitudinal definitions of neurodegeneration
L.E.M. Wisse, S.R. Das, C. Davatzikos, B.C. Dickerson, S.X. Xie, P.A. Yushkevich, D.A. Wolk
NeuroImage: Clinical  ·  01 Jan 2018  ·  doi:10.1016/J.NICL.2018.02.008
Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS
Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS
Baris U. Oguz, Jiancong Wang, Natalie Yushkevich, Alison Pouch, James Gee, Paul A. Yushkevich, Nadav Schwartz, Ipek Oguz
Lecture Notes in Computer Science  ·  01 Jan 2018  ·  doi:10.1007/978-3-030-00807-9_14
Clinical validation of automated hippocampal segmentation in temporal lobe epilepsy
Clinical validation of automated hippocampal segmentation in temporal lobe epilepsy
Peter N. Hadar, Lohith G. Kini, Carlos Coto, Virginie Piskin, Lauren E. Callans, Stephanie H. Chen, Joel M. Stein, Sandhitsu R. Das, Paul A. Yushkevich, Kathryn A. Davis
NeuroImage: Clinical  ·  01 Jan 2018  ·  doi:10.1016/J.NICL.2018.09.032
Characterizing Anatomical Variability and Alzheimer s Disease Related Cortical Thinning in the Medial Temporal Lobe Using Graph-Based Groupwise Registration and Point Set Geodesic Shooting
Characterizing Anatomical Variability and Alzheimer’s Disease Related Cortical Thinning in the Medial Temporal Lobe Using Graph-Based Groupwise Registration and Point Set Geodesic Shooting
Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Ranjit Ittyerah, Jiancong Wang, David A. Wolk, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2018  ·  doi:10.1007/978-3-030-04747-4_3

2017

Mapping the structural and functional network architecture of the medial temporal lobe using 7T MRI
Mapping the structural and functional network architecture of the medial temporal lobe using 7T MRI
Preya Shah, Danielle S. Bassett, Laura E.M. Wisse, John A. Detre, Joel M. Stein, …, David A. Wolk, Mark A. Elliott, Brian Litt, Kathryn A. Davis, Sandhitsu R. Das
Human Brain Mapping  ·  20 Nov 2017  ·  doi:10.1002/HBM.23887
A tract-specific approach to assessing white matter in preterm infants
A tract-specific approach to assessing white matter in preterm infants
Diliana Pecheva, Paul Yushkevich, Dafnis Batalle, Emer Hughes, Paul Aljabar, …, Joseph V. Hajnal, A. David Edwards, Daniel C. Alexander, Serena J. Counsell, Hui Zhang
NeuroImage  ·  01 Aug 2017  ·  doi:10.1016/J.NEUROIMAGE.2017.04.057
ITK-SNAP: An Intractive Medical Image Segmentation Tool to Meet the Need for Expert-Guided Segmentation of Complex Medical Images
ITK-SNAP: An Intractive Medical Image Segmentation Tool to Meet the Need for Expert-Guided Segmentation of Complex Medical Images
Paul A. Yushkevich, Guido Gerig
IEEE Pulse  ·  01 Jul 2017  ·  doi:10.1109/MPUL.2017.2701493
Neural Correlates of Verbal Episodic Memory and Lexical Retrieval in Logopenic Variant Primary Progressive Aphasia
Neural Correlates of Verbal Episodic Memory and Lexical Retrieval in Logopenic Variant Primary Progressive Aphasia
Khaing T. Win, John Pluta, Paul Yushkevich, David J. Irwin, Corey T. McMillan, Katya Rascovsky, David Wolk, Murray Grossman
Frontiers in Neuroscience  ·  14 Jun 2017  ·  doi:10.3389/FNINS.2017.00330
Spatiotemporal Segmentation and Modeling of the Mitral Valve in Real-Time 3D Echocardiographic Images
Spatiotemporal Segmentation and Modeling of the Mitral Valve in Real-Time 3D Echocardiographic Images
Alison M. Pouch, Ahmed H. Aly, Eric K. Lai, Natalie Yushkevich, Rutger H. Stoffers, Joseph H. Gorman, Albert T. Cheung, Joseph H. Gorman, Robert C. Gorman, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2017  ·  doi:10.1007/978-3-319-66182-7_85
213: Novel 3D morphologic analysis of the early placenta using deformable medial modeling
213: Novel 3D morphologic analysis of the early placenta using deformable medial modeling
Alison M. Pouch, Ipek Oguz, Natalie Yushkevich, James C. Gee, Paul A. Yushkevich, Nadav Schwartz
American Journal of Obstetrics and Gynecology  ·  01 Jan 2017  ·  doi:10.1016/J.AJOG.2016.11.118
Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion
Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion
Mengjin Dong, Ipek Oguz, Nagesh Subbana, Peter Calabresi, Russell T. Shinohara, Paul Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2017  ·  doi:10.1007/978-3-319-67434-6_16
Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability
Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability
Long Xie, John B. Pluta, Sandhitsu R. Das, Laura E.M. Wisse, Hongzhi Wang, …, Brian B. Avants, Song-Lin Ding, José V. Manjón, David A. Wolk, Paul A. Yushkevich
NeuroImage  ·  01 Jan 2017  ·  doi:10.1016/J.NEUROIMAGE.2016.09.070
Medial temporal lobe subregional morphometry using high resolution MRI in Alzheimer s disease
Medial temporal lobe subregional morphometry using high resolution MRI in Alzheimer's disease
David A. Wolk, Sandhitsu R. Das, Susanne G. Mueller, Michael W. Weiner, Paul A. Yushkevich
Neurobiology of Aging  ·  01 Jan 2017  ·  doi:10.1016/J.NEUROBIOLAGING.2016.09.011
Image Segmentation and Modeling of the Pediatric Tricuspid Valve in Hypoplastic Left Heart Syndrome
Image Segmentation and Modeling of the Pediatric Tricuspid Valve in Hypoplastic Left Heart Syndrome
Alison M. Pouch, Ahmed H. Aly, Andras Lasso, Alexander V. Nguyen, Adam B. Scanlan, …, Gabor Fichtinger, Robert C. Gorman, Joseph H. Gorman, Paul A. Yushkevich, Matthew A. Jolley
Lecture Notes in Computer Science  ·  01 Jan 2017  ·  doi:10.1007/978-3-319-59448-4_10
Gradient Boosted Trees for Corrective Learning
Gradient Boosted Trees for Corrective Learning
Baris U. Oguz, Russell T. Shinohara, Paul A. Yushkevich, Ipek Oguz
Lecture Notes in Computer Science  ·  01 Jan 2017  ·  doi:10.1007/978-3-319-67389-9_24
A protocol for manual segmentation of medial temporal lobe subregions in 7 Tesla MRI
A protocol for manual segmentation of medial temporal lobe subregions in 7 Tesla MRI
D. Berron, P. Vieweg, A. Hochkeppler, J.B. Pluta, S.-L. Ding, …, D.A. Wolk, T. Wolbers, P.A. Yushkevich, E. Düzel, L.E.M. Wisse
NeuroImage: Clinical  ·  01 Jan 2017  ·  doi:10.1016/J.NICL.2017.05.022

2016

A harmonized segmentation protocol for hippocampal and parahippocampal subregions: Why do we need one and what are the key goals
A harmonized segmentation protocol for hippocampal and parahippocampal subregions: Why do we need one and what are the key goals?
Laura E.M. Wisse, Ana M. Daugherty, Rosanna K. Olsen, David Berron, Valerie A. Carr, …, Lei Wang, Julie L. Winterburn, Michael A. Yassa, Paul A. Yushkevich, Renaud la Joie
Hippocampus  ·  15 Nov 2016  ·  doi:10.1002/HIPO.22671
Clinical Application of Automatic Segmentation of Medial Temporal Lobe Subregions in Prodromal and Dementia-Level Alzheimer s Disease
Clinical Application of Automatic Segmentation of Medial Temporal Lobe Subregions in Prodromal and Dementia-Level Alzheimer’s Disease
Eske Christiane Gertje, John Pluta, Sandhitsu Das, Lauren Mancuso, Dasha Kliot, Paul Yushkevich, David Wolk
Journal of Alzheimer's Disease  ·  04 Oct 2016  ·  doi:10.3233/JAD-160014
Comparison of In Vivo and Ex Vivo MRI of the Human Hippocampal Formation in the Same Subjects
Comparison of In Vivo and Ex Vivo MRI of the Human Hippocampal Formation in the Same Subjects
L.E.M. Wisse, D.H. Adler, R. Ittyerah, J.B. Pluta, J.L. Robinson, …, W. Liu, S. Pickup, S.R. Das, D.A. Wolk, P.A. Yushkevich
Cerebral Cortex  ·  24 Sep 2016  ·  doi:10.1093/CERCOR/BHW299
The value of preoperative 3-dimensional over 2-dimensional valve analysis in predicting recurrent ischemic mitral regurgitation after mitral annuloplasty
The value of preoperative 3-dimensional over 2-dimensional valve analysis in predicting recurrent ischemic mitral regurgitation after mitral annuloplasty
Inez J. Wijdh-den Hamer, Wobbe Bouma, Eric K. Lai, Melissa M. Levack, Eric K. Shang, …, Albert T. Cheung, Matthew J. Gillespie, Benjamin M. Jackson, Joseph H. Gorman, Robert C. Gorman
The Journal of Thoracic and Cardiovascular Surgery  ·  01 Sep 2016  ·  doi:10.1016/J.JTCVS.2016.06.040
Modeling the Myxomatous Mitral Valve With Three-Dimensional Echocardiography
Modeling the Myxomatous Mitral Valve With Three-Dimensional Echocardiography
Alison M. Pouch, Benjamin M. Jackson, Eric Lai, Manabu Takebe, Sijie Tian, …, Prakash A. Patel, Hongzhi Wang, Paul A. Yushkevich, Robert C. Gorman, Joseph H. Gorman
The Annals of Thoracic Surgery  ·  01 Sep 2016  ·  doi:10.1016/J.ATHORACSUR.2016.05.087
Self-gated MRI of multiple beat morphologies in the presence of arrhythmias
Self-gated MRI of multiple beat morphologies in the presence of arrhythmias
Francisco Contijoch, Srikant Kamesh Iyer, James J. Pilla, Paul Yushkevich, Joseph H. Gorman, Robert C. Gorman, Harold Litt, Yuchi Han, Walter R.T. Witschey
Magnetic Resonance in Medicine  ·  31 Aug 2016  ·  doi:10.1002/MRM.26381
In-vivo heterogeneous functional and residual strains in human aortic valve leaflets
In-vivo heterogeneous functional and residual strains in human aortic valve leaflets
Ankush Aggarwal, Alison M. Pouch, Eric Lai, John Lesicko, Paul A. Yushkevich, Joseph H. Gorman III, Robert C. Gorman, Michael S. Sacks
Journal of Biomechanics  ·  01 Aug 2016  ·  doi:10.1016/J.JBIOMECH.2016.04.038
ITK-SNAP: An interactive tool for semi-automatic segmentation of multi-modality biomedical images
ITK-SNAP: An interactive tool for semi-automatic segmentation of multi-modality biomedical images
Paul A. Yushkevich, Yang Gao, Guido Gerig
2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)  ·  01 Aug 2016  ·  doi:10.1109/EMBC.2016.7591443
A framework for informing segmentation of in vivo MRI with information derived from ex vivo imaging: Application in the medial temporal lobe
A framework for informing segmentation of in vivo MRI with information derived from ex vivo imaging: Application in the medial temporal lobe
Paul A. Yushkevich, Laura Wisse, Daniel Adler, Ranjit Ittyerah, John B. Pluta, …, Jon B. Toledo, Weixia Liu, Stephen Pickup, Sandhitsu R. Das, David A. Wolk
2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)  ·  01 Aug 2016  ·  doi:10.1109/EMBC.2016.7592099
Quantification of Left Ventricular Function With Premature Ventricular Complexes Reveals Variable Hemodynamics
Quantification of Left Ventricular Function With Premature Ventricular Complexes Reveals Variable Hemodynamics
Francisco Contijoch, Kelly Rogers, Hannah Rears, Mohammed Shahid, Peter Kellman, …, Erica S. Zado, Gregory E. Supple, Francis E. Marchlinski, Walter R.T. Witschey, Yuchi Han
Circulation: Arrhythmia and Electrophysiology  ·  01 Apr 2016  ·  doi:10.1161/CIRCEP.115.003520
Maturation Along White Matter Tracts in Human Brain Using a Diffusion Tensor Surface Model Tract-Specific Analysis
Maturation Along White Matter Tracts in Human Brain Using a Diffusion Tensor Surface Model Tract-Specific Analysis
Zhang Chen, Hui Zhang, Paul A. Yushkevich, Min Liu, Christian Beaulieu
Frontiers in Neuroanatomy  ·  16 Feb 2016  ·  doi:10.3389/FNANA.2016.00009
Automated Hippocampal Subfield Segmentation at 7T MRI
Automated Hippocampal Subfield Segmentation at 7T MRI
L.E.M. Wisse, H.J. Kuijf, A.M. Honingh, H. Wang, J.B. Pluta, S.R. Das, D.A. Wolk, J.J.M. Zwanenburg, P.A. Yushkevich, M.I. Geerlings
American Journal of Neuroradiology  ·  04 Feb 2016  ·  doi:10.3174/ajnr.A4659
Automated Hippocampal Subfield Segmentation at 7T MRI
Automated Hippocampal Subfield Segmentation at 7T MRI
L.E.M. Wisse, H.J. Kuijf, A.M. Honingh, H. Wang, J.B. Pluta, S.R. Das, D.A. Wolk, J.J.M. Zwanenburg, P.A. Yushkevich, M.I. Geerlings
American Journal of Neuroradiology  ·  04 Feb 2016  ·  doi:10.3174/AJNR.A4659
Preoperative Three-Dimensional Valve Analysis Predicts Recurrent Ischemic Mitral Regurgitation After Mitral Annuloplasty
Preoperative Three-Dimensional Valve Analysis Predicts Recurrent Ischemic Mitral Regurgitation After Mitral Annuloplasty
Wobbe Bouma, Eric K. Lai, Melissa M. Levack, Eric K. Shang, Alison M. Pouch, …, Y. Joseph Woo, Albert T. Cheung, Benjamin M. Jackson, Joseph H. Gorman, Robert C. Gorman
The Annals of Thoracic Surgery  ·  01 Feb 2016  ·  doi:10.1016/J.ATHORACSUR.2015.09.076
Supervoxel-Based Hierarchical Markov Random Field Framework for Multi-atlas Segmentation
Supervoxel-Based Hierarchical Markov Random Field Framework for Multi-atlas Segmentation
Ning Yu, Hongzhi Wang, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2016  ·  doi:10.1007/978-3-319-47118-1_13
Probabilistic Atlas of the Human Hippocampus Combining Ex Vivo MRI and Histology
Probabilistic Atlas of the Human Hippocampus Combining Ex Vivo MRI and Histology
Daniel H. Adler, Ranjit Ittyerah, John Pluta, Stephen Pickup, Weixia Liu, David A. Wolk, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2016  ·  doi:10.1007/978-3-319-46726-9_8
Globally Optimal Label Fusion with Shape Priors
Globally Optimal Label Fusion with Shape Priors
Ipek Oguz, Satyananda Kashyap, Hongzhi Wang, Paul Yushkevich, Milan Sonka
Lecture Notes in Computer Science  ·  01 Jan 2016  ·  doi:10.1007/978-3-319-46723-8_62
Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI
Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI
Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Hongzhi Wang, David A. Wolk, Jose V. Manjón, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2016  ·  doi:10.1007/978-3-319-46723-8_65
A brain stress test: Cerebral perfusion during memory encoding in mild cognitive impairment
A brain stress test: Cerebral perfusion during memory encoding in mild cognitive impairment
Long Xie, Sudipto Dolui, Sandhitsu R. Das, Grace E. Stockbower, Molly Daffner, Hengyi Rao, Paul A. Yushkevich, John A. Detre, David A. Wolk
NeuroImage: Clinical  ·  01 Jan 2016  ·  doi:10.1016/J.NICL.2016.03.002

2015

Medially constrained deformable modeling for segmentation of branching medial structures: Application to aortic valve segmentation and morphometry
Medially constrained deformable modeling for segmentation of branching medial structures: Application to aortic valve segmentation and morphometry
Alison M. Pouch, Sijie Tian, Manabu Takebe, Jiefu Yuan, Robert Gorman, …, Hongzhi Wang, Benjamin M. Jackson, Joseph H. Gorman, Robert C. Gorman, Paul A. Yushkevich
Medical Image Analysis  ·  01 Dec 2015  ·  doi:10.1016/j.media.2015.09.003
Suspected non-AD pathology in mild cognitive impairment
Suspected non-AD pathology in mild cognitive impairment
Laura E.M. Wisse, Nirali Butala, Sandhitsu R. Das, Christos Davatzikos, Bradford C. Dickerson, Sanjeev N. Vaishnavi, Paul A. Yushkevich, David A. Wolk
Neurobiology of Aging  ·  01 Dec 2015  ·  doi:10.1016/J.NEUROBIOLAGING.2015.08.029
Medially constrained deformable modeling for segmentation of branching medial structures: Application to aortic valve segmentation and morphometry
Medially constrained deformable modeling for segmentation of branching medial structures: Application to aortic valve segmentation and morphometry
Alison M. Pouch, Sijie Tian, Manabu Takebe, Jiefu Yuan, Robert Gorman, …, Hongzhi Wang, Benjamin M. Jackson, Joseph H. Gorman, Robert C. Gorman, Paul A. Yushkevich
Medical Image Analysis  ·  01 Dec 2015  ·  doi:10.1016/J.MEDIA.2015.09.003
Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge
Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge
David M. Cash, Chris Frost, Leonardo O. Iheme, Devrim Ünay, Melek Kandemir, …, Paul A. Yushkevich, Ian B. Malone, Nick C. Fox, Jonathan M. Schott, Sebastien Ourselin
NeuroImage  ·  01 Dec 2015  ·  doi:10.1016/J.NEUROIMAGE.2015.07.087
Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol
Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol
Paul A. Yushkevich, Robert S.C. Amaral, Jean C. Augustinack, Andrew R. Bender, Jeffrey D. Bernstein, …, Lei Wang, Julie L. Winterburn, Laura E.M. Wisse, Michael A. Yassa, Michael M. Zeineh
NeuroImage  ·  01 May 2015  ·  doi:10.1016/J.NEUROIMAGE.2015.01.004
Relationship of Contextual Cueing and Hippocampal Volume in Amnestic Mild Cognitive Impairment Patients and Cognitively Normal Older Adults
Relationship of Contextual Cueing and Hippocampal Volume in Amnestic Mild Cognitive Impairment Patients and Cognitively Normal Older Adults
Selam Negash, Daria Kliot, Darlene V. Howard, James H. Howard, Sandhistu R. Das, Paul A. Yushkevich, John B. Pluta, Steven E. Arnold, David A. Wolk
Journal of the International Neuropsychological Society  ·  01 Apr 2015  ·  doi:10.1017/S1355617715000223
Multi-atlas label fusion with augmented atlases for fast and accurate segmentation of cardiac MR images
Multi-atlas label fusion with augmented atlases for fast and accurate segmentation of cardiac MR images
Long Xie, Suman Sedai, Xi Liang, Colin B. Compas, Hongzhi Wang, Paul A. Yushkevich, Tanveer Syeda-Mahmood
2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI)  ·  01 Apr 2015  ·  doi:10.1109/ISBI.2015.7163891
User-initialized active contour segmentation and golden-angle real-time cardiovascular magnetic resonance enable accurate assessment of LV function in patients with sinus rhythm and arrhythmias
User-initialized active contour segmentation and golden-angle real-time cardiovascular magnetic resonance enable accurate assessment of LV function in patients with sinus rhythm and arrhythmias
Francisco Contijoch, Walter R.T. Witschey, Kelly Rogers, Hannah Rears, Michael Hansen, Paul Yushkevich, Joseph Gorman, Robert C. Gorman, Yuchi Han
Journal of Cardiovascular Magnetic Resonance  ·  01 Jan 2015  ·  doi:10.1186/S12968-015-0146-9
Segmentation of the Aortic Valve Apparatus in 3D Echocardiographic Images: Deformable Modeling of a Branching Medial Structure
Segmentation of the Aortic Valve Apparatus in 3D Echocardiographic Images: Deformable Modeling of a Branching Medial Structure
Alison M. Pouch, Sijie Tian, Manabu Takabe, Hongzhi Wang, Jiefu Yuan, Albert T. Cheung, Benjamin M. Jackson, Joseph H. Gorman, Robert C. Gorman, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2015  ·  doi:10.1007/978-3-319-14678-2_20
Guest editorial
Guest editorial
Lei Wang, Paul Yushkevich, Sebastien Ourselin
Neurobiology of Aging  ·  01 Jan 2015  ·  doi:10.1016/J.NEUROBIOLAGING.2014.09.021
Anterior and posterior MTL networks in aging and MCI
Anterior and posterior MTL networks in aging and MCI
Sandhitsu R. Das, John Pluta, Lauren Mancuso, Daria Kliot, Paul A. Yushkevich, David A. Wolk
Neurobiology of Aging  ·  01 Jan 2015  ·  doi:10.1016/J.NEUROBIOLAGING.2014.03.041
Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction
Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction
Benjamin M. Kandel, Danny J.J. Wang, John A. Detre, James C. Gee, Brian B. Avants
NeuroImage  ·  01 Jan 2015  ·  doi:10.1016/j.neuroimage.2014.10.052

2014

White Matter Disease Contributes to Apathy and Disinhibition in Behavioral Variant Frontotemporal Dementia
White Matter Disease Contributes to Apathy and Disinhibition in Behavioral Variant Frontotemporal Dementia
John P. Powers, Lauren Massimo, Corey T. McMillan, Paul A. Yushkevich, Hui Zhang, James C. Gee, Murray Grossman
Cognitive and Behavioral Neurology  ·  01 Dec 2014  ·  doi:10.1097/WNN.0000000000000044
Automated volumetry and regional thickness analysis of hippocampal subfields and medial temporal cortical structures in mild cognitive impairment
Automated volumetry and regional thickness analysis of hippocampal subfields and medial temporal cortical structures in mild cognitive impairment
Paul A. Yushkevich, John B. Pluta, Hongzhi Wang, Long Xie, Song-Lin Ding, Eske C. Gertje, Lauren Mancuso, Daria Kliot, Sandhitsu R. Das, David A. Wolk
Human Brain Mapping  ·  02 Sep 2014  ·  doi:10.1002/HBM.22627
Real-Time Magnetic Resonance Imaging Technique for Determining Left Ventricle Pressure-Volume Loops
Real-Time Magnetic Resonance Imaging Technique for Determining Left Ventricle Pressure-Volume Loops
Walter R.T. Witschey, Francisco Contijoch, Jeremy R. McGarvey, Victor A. Ferrari, Michael S. Hansen, …, Julio A. Chirinos, Paul A. Yushkevich, Joseph H. Gorman, James J. Pilla, Robert C. Gorman
The Annals of Thoracic Surgery  ·  01 May 2014  ·  doi:10.1016/J.ATHORACSUR.2014.01.010
Statistical Assessment of Normal Mitral Annular Geometry Using Automated Three-Dimensional Echocardiographic Analysis
Statistical Assessment of Normal Mitral Annular Geometry Using Automated Three-Dimensional Echocardiographic Analysis
Alison M. Pouch, Mathieu Vergnat, Jeremy R. McGarvey, Giovanni Ferrari, Benjamin M. Jackson, Chandra M. Sehgal, Paul A. Yushkevich, Robert C. Gorman, Joseph H. Gorman
The Annals of Thoracic Surgery  ·  01 Jan 2014  ·  doi:10.1016/J.ATHORACSUR.2013.07.096
Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI
Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI
Daniel H. Adler, John Pluta, Salmon Kadivar, Caryne Craige, James C. Gee, Brian B. Avants, Paul A. Yushkevich
NeuroImage  ·  01 Jan 2014  ·  doi:10.1016/J.NEUROIMAGE.2013.08.067
Fully automatic segmentation of the mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas joint label fusion and deformable medial modeling
Fully automatic segmentation of the mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas joint label fusion and deformable medial modeling
A.M. Pouch, H. Wang, M. Takabe, B.M. Jackson, J.H. Gorman, R.C. Gorman, P.A. Yushkevich, C.M. Sehgal
Medical Image Analysis  ·  01 Jan 2014  ·  doi:10.1016/J.MEDIA.2013.10.001
Automatic Clustering and Thickness Measurement of Anatomical Variants of the Human Perirhinal Cortex
Automatic Clustering and Thickness Measurement of Anatomical Variants of the Human Perirhinal Cortex
Long Xie, John Pluta, Hongzhi Wang, Sandhitsu R. Das, Lauren Mancuso, Dasha Kliot, Brian B. Avants, Song-Lin Ding, David A. Wolk, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2014  ·  doi:10.1007/978-3-319-10443-0_11

2013

Multi-Atlas Segmentation with Joint Label Fusion
Multi-Atlas Segmentation with Joint Label Fusion
Hongzhi Wang, J. W. Suh, S. R. Das, J. B. Pluta, C. Craige, P. A. Yushkevich
IEEE Transactions on Pattern Analysis and Machine Intelligence  ·  01 Mar 2013  ·  doi:10.1109/TPAMI.2012.143
White Matter Disease Correlates with Lexical Retrieval Deficits in Primary Progressive Aphasia
White Matter Disease Correlates with Lexical Retrieval Deficits in Primary Progressive Aphasia
John P. Powers, Corey T. McMillan, Caroline C. Brun, Paul A. Yushkevich, Hui Zhang, James C. Gee, Murray Grossman
Frontiers in Neurology  ·  01 Jan 2013  ·  doi:10.3389/FNEUR.2013.00212
Multi-atlas Segmentation with Robust Label Transfer and Label Fusion
Multi-atlas Segmentation with Robust Label Transfer and Label Fusion
Hongzhi Wang, Alison Pouch, Manabu Takabe, Benjamin Jackson, Joseph Gorman, Robert Gorman, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2013  ·  doi:10.1007/978-3-642-38868-2_46
Multi-atlas segmentation with joint label fusion and corrective learning an open source implementation
Multi-atlas segmentation with joint label fusion and corrective learning—an open source implementation
Hongzhi Wang, Paul A. Yushkevich
Frontiers in Neuroinformatics  ·  01 Jan 2013  ·  doi:10.3389/FNINF.2013.00027
Multi-atlas Segmentation without Registration: A Supervoxel-Based Approach
Multi-atlas Segmentation without Registration: A Supervoxel-Based Approach
Hongzhi Wang, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2013  ·  doi:10.1007/978-3-642-40760-4_67
Groupwise Segmentation with Multi-atlas Joint Label Fusion
Groupwise Segmentation with Multi-atlas Joint Label Fusion
Hongzhi Wang, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2013  ·  doi:10.1007/978-3-642-40811-3_89
Deformable Modeling Using a 3D Boundary Representation with Quadratic Constraints on the Branching Structure of the Blum Skeleton
Deformable Modeling Using a 3D Boundary Representation with Quadratic Constraints on the Branching Structure of the Blum Skeleton
Paul A. Yushkevich, Hui Gary Zhang
Lecture Notes in Computer Science  ·  01 Jan 2013  ·  doi:10.1007/978-3-642-38868-2_24
Automated Segmentation and Geometrical Modeling of the Tricuspid Aortic Valve in 3D Echocardiographic Images
Automated Segmentation and Geometrical Modeling of the Tricuspid Aortic Valve in 3D Echocardiographic Images
Alison M. Pouch, Hongzhi Wang, Manabu Takabe, Benjamin M. Jackson, Chandra M. Sehgal, Joseph H. Gorman, Robert C. Gorman, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2013  ·  doi:10.1007/978-3-642-40811-3_61

2012

Fully automatic segmentation of the open mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas label fusion and deformable medial modeling
Fully automatic segmentation of the open mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas label fusion and deformable medial modeling
Alison M. Pouch, Hongzhi Wang, Paul A. Yushkevich, Manabu Takabe, Benjamin M. Jackson, Joseph H. Gorman, Robert C. Gorman, Chandra M. Sehgal
2012 IEEE International Ultrasonics Symposium  ·  01 Oct 2012  ·  doi:10.1109/ULTSYM.2012.0055
Increased functional connectivity within medial temporal lobe in mild cognitive impairment
Increased functional connectivity within medial temporal lobe in mild cognitive impairment
Sandhitsu R. Das, John Pluta, Lauren Mancuso, Dasha Kliot, Sylvia Orozco, Bradford C. Dickerson, Paul A. Yushkevich, David A. Wolk
Hippocampus  ·  20 Jul 2012  ·  doi:10.1002/HIPO.22051
In vivo Analysis of Hippocampal Subfield Atrophy in Mild Cognitive Impairment via Semi-Automatic Segmentation of T2-Weighted MRI
In vivo Analysis of Hippocampal Subfield Atrophy in Mild Cognitive Impairment via Semi-Automatic Segmentation of T2-Weighted MRI
John Pluta, Paul Yushkevich, Sandhitsu Das, David Wolk
Journal of Alzheimer's Disease  ·  05 Jul 2012  ·  doi:10.3233/JAD-2012-111931
Spatial bias in multi-atlas based segmentation
Spatial bias in multi-atlas based segmentation
Hongzhi Wang, P. A. Yushkevich
2012 IEEE Conference on Computer Vision and Pattern Recognition  ·  01 Jun 2012  ·  doi:10.1109/CVPR.2012.6247765
From label fusion to correspondence fusion: A new approach to unbiased groupwise registration
From label fusion to correspondence fusion: A new approach to unbiased groupwise registration
P. A. Yushkevich, Hongzhi Wang, J. Pluta, B. B. Avants
2012 IEEE Conference on Computer Vision and Pattern Recognition  ·  01 Jun 2012  ·  doi:10.1109/CVPR.2012.6247771
White matter imaging contributes to the multimodal diagnosis of frontotemporal lobar degeneration
White matter imaging contributes to the multimodal diagnosis of frontotemporal lobar degeneration
C.T. McMillan, C. Brun, S. Siddiqui, M. Churgin, D. Libon, P. Yushkevich, H. Zhang, A. Boller, J. Gee, M. Grossman
Neurology  ·  29 May 2012  ·  doi:10.1212/WNL.0B013E31825830BD
Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI
Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI
Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich
2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)  ·  01 May 2012  ·  doi:10.1109/ISBI.2012.6235542
Dependency prior for multi-atlas label fusion
Dependency prior for multi-atlas label fusion
Hongzhi Wang, Paul A Yushkevich
2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)  ·  01 May 2012  ·  doi:10.1109/ISBI.2012.6235692
Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI
Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI
Sandhitsu R. Das, Brian B. Avants, John Pluta, Hongzhi Wang, Jung W. Suh, Michael W. Weiner, Susanne G. Mueller, Paul A. Yushkevich
NeuroImage  ·  01 Apr 2012  ·  doi:10.1016/J.NEUROIMAGE.2012.01.098
Semi-automated mitral valve morphometry and computational stress analysis using 3D ultrasound
Semi-automated mitral valve morphometry and computational stress analysis using 3D ultrasound
Alison M. Pouch, Chun Xu, Paul A. Yushkevich, Arminder S. Jassar, Mathieu Vergnat, Joseph H. Gorman, Robert C. Gorman, Chandra M. Sehgal, Benjamin M. Jackson
Journal of Biomechanics  ·  01 Mar 2012  ·  doi:10.1016/J.JBIOMECH.2011.11.033
Dynamic shape modeling of the mitral valve from real-time 3D ultrasound images using continuous medial representation
Dynamic shape modeling of the mitral valve from real-time 3D ultrasound images using continuous medial representation
Alison M. Pouch, Paul A. Yushkevich, Benjamin M. Jackson, Joseph H. Gorman III, Robert C. Gorman, Chandra M. Sehgal
SPIE Proceedings  ·  23 Feb 2012  ·  doi:10.1117/12.910708
Development of a semi-automated method for mitral valve modeling with medial axis representation using 3D ultrasound
Development of a semi-automated method for mitral valve modeling with medial axis representation using 3D ultrasound
Alison M. Pouch, Paul A. Yushkevich, Benjamin M. Jackson, Arminder S. Jassar, Mathieu Vergnat, Joseph H. Gorman, Robert C. Gorman, Chandra M. Sehgal
Medical Physics  ·  31 Jan 2012  ·  doi:10.1118/1.3673773
Robust Automated Amygdala Segmentation via Multi-Atlas Diffeomorphic Registration
Robust Automated Amygdala Segmentation via Multi-Atlas Diffeomorphic Registration
Jamie L. Hanson, Jung W. Suh, Brendon M. Nacewicz, Matthew J. Sutterer, Amelia A. Cayo, …, Brian B. Avants, Paul A. Yushkevich, Marilyn J. Essex, Seth D. Pollak, Richard J. Davidson
Frontiers in Neuroscience  ·  01 Jan 2012  ·  doi:10.3389/FNINS.2012.00166

2011

Heterogeneity of functional activation during memory encoding across hippocampal subfields in temporal lobe epilepsy
Heterogeneity of functional activation during memory encoding across hippocampal subfields in temporal lobe epilepsy
Sandhitsu R. Das, Dawn Mechanic-Hamilton, John Pluta, Marc Korczykowski, John A. Detre, Paul A. Yushkevich
NeuroImage  ·  01 Oct 2011  ·  doi:10.1016/J.NEUROIMAGE.2011.06.085
Regression-based label fusion for multi-atlas segmentation
Regression-based label fusion for multi-atlas segmentation
Hongzhi Wang, Jung Wook Suh, Sandhitsu Das, John Pluta, Murat Altinay, Paul Yushkevich
CVPR 2011  ·  01 Jun 2011  ·  doi:10.1109/CVPR.2011.5995382
A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation
A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation
Hongzhi Wang, Sandhitsu R. Das, Jung Wook Suh, Murat Altinay, John Pluta, Caryne Craige, Brian Avants, Paul A. Yushkevich
NeuroImage  ·  01 Apr 2011  ·  doi:10.1016/J.NEUROIMAGE.2011.01.006
Hippocampus segmentation using a stable maximum likelihood classifier ensemble algorithm
Hippocampus segmentation using a stable maximum likelihood classifier ensemble algorithm
Hongzhi Wang, Jung Wook Suh, Sandhitsu Das, Murat Altinay, John Pluta, Paul Yushkevich
2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 Mar 2011  ·  doi:10.1109/ISBI.2011.5872812
Optimal Weights for Multi-atlas Label Fusion
Optimal Weights for Multi-atlas Label Fusion
Hongzhi Wang, Jung Wook Suh, John Pluta, Murat Altinay, Paul Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2011  ·  doi:10.1007/978-3-642-22092-0_7

2010

Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI
Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI
Paul A. Yushkevich, Hongzhi Wang, John Pluta, Sandhitsu R. Das, Caryne Craige, Brian B. Avants, Michael W. Weiner, Susanne Mueller
NeuroImage  ·  01 Dec 2010  ·  doi:10.1016/J.NEUROIMAGE.2010.06.040
Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development
Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development
Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee
NeuroImage  ·  01 Nov 2010  ·  doi:10.1016/J.NEUROIMAGE.2010.06.072
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features
Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich
Medical Image Analysis  ·  01 Oct 2010  ·  doi:10.1016/J.MEDIA.2010.05.002
3D mesh based wall thickness measurement: Identification of left ventricular hypertrophy phenotypes
3D mesh based wall thickness measurement: Identification of left ventricular hypertrophy phenotypes
C Tobon-Gomez, C Butakoff, P Yushkevich, M Huguet, A F Frangi
2010 Annual International Conference of the IEEE Engineering in Medicine and Biology  ·  01 Aug 2010  ·  doi:10.1109/IEMBS.2010.5626538
N4ITK: Improved N3 Bias Correction
N4ITK: Improved N3 Bias Correction
Nicholas J Tustison, Brian B Avants, Philip A Cook, Yuanjie Zheng, Alexander Egan, Paul A Yushkevich, James C Gee
IEEE Transactions on Medical Imaging  ·  01 Jun 2010  ·  doi:10.1109/TMI.2010.2046908
Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data
Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data
Paul A. Yushkevich, Brian B. Avants, Sandhitsu R. Das, John Pluta, Murat Altinay, Caryne Craige
NeuroImage  ·  01 Apr 2010  ·  doi:10.1016/J.NEUROIMAGE.2009.12.007
The optimal template effect in hippocampus studies of diseased populations
The optimal template effect in hippocampus studies of diseased populations
Brian B. Avants, Paul Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John Detre, James C. Gee
NeuroImage  ·  01 Feb 2010  ·  doi:10.1016/J.NEUROIMAGE.2009.09.062
Standing on the Shoulders of Giants: Improving Medical Image Segmentation via Bias Correction
Standing on the Shoulders of Giants: Improving Medical Image Segmentation via Bias Correction
Hongzhi Wang, Sandhitsu Das, John Pluta, Caryne Craige, Murat Altinay, Brian Avants, Michael Weiner, Susanne Mueller, Paul Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2010  ·  doi:10.1007/978-3-642-15711-0_14
Shape-based semi-automatic hippocampal subfield segmentation with learning-based bias removal
Shape-based semi-automatic hippocampal subfield segmentation with learning-based bias removal
Hongzhi Wang, Sandhitsu R. Das, John Pluta, Caryne Craige, Murat Altinay, Michael Weiner, Susanne Mueller, Paul A. Yushkevich
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 Jan 2010  ·  doi:10.1109/ISBI.2010.5490318
Automatic Cardiac MRI Segmentation Using a Biventricular Deformable Medial Model
Automatic Cardiac MRI Segmentation Using a Biventricular Deformable Medial Model
Hui Sun, Alejandro F. Frangi, Hongzhi Wang, Federico M. Sukno, Catalina Tobon-Gomez, Paul A. Yushkevich
Lecture Notes in Computer Science  ·  01 Jan 2010  ·  doi:10.1007/978-3-642-15705-9_57
A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi
A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2010  ·  doi:10.1007/978-3-642-14366-3_8

2009

Hippocampal volumetry and functional MRI of memory in temporal lobe epilepsy
Hippocampal volumetry and functional MRI of memory in temporal lobe epilepsy
Dawn Mechanic-Hamilton, Marc Korczykowski, Paul A. Yushkevich, Kathy Lawler, John Pluta, …, Joseph I. Tracy, Ronald L. Wolf, Michael R. Sperling, Jacqueline A. French, John A. Detre
Epilepsy & Behavior  ·  01 Sep 2009  ·  doi:10.1016/J.YEBEH.2009.07.012
Ventricularwall thickness analysis in acute myocardial infarction and hypertrophic cardiomyopathy
Ventricularwall thickness analysis in acute myocardial infarction and hypertrophic cardiomyopathy
Hui Sun, Catalina Tobon-Gomez, Sandhitsu R. Das, Marina Huguet, Paul A. Yushkevich, Alejandro F. Frangi
2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 Jun 2009  ·  doi:10.1109/ISBI.2009.5193136
Structure specific analysis of the hippocampus in temporal lobe epilepsy
Structure specific analysis of the hippocampus in temporal lobe epilepsy
Sandhitsu R. Das, Dawn Mechanic‐Hamilton, Marc Korczykowski, John Pluta, Simon Glynn, Brian B. Avants, John A. Detre, Paul A. Yushkevich
Hippocampus  ·  12 May 2009  ·  doi:10.1002/HIPO.20620
Continuous medial representation of brain structures using the biharmonic PDE
Continuous medial representation of brain structures using the biharmonic PDE
Paul A. Yushkevich
NeuroImage  ·  01 Mar 2009  ·  doi:10.1016/J.NEUROIMAGE.2008.10.051
A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T
A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T
P YUSHKEVICH, B AVANTS, J PLUTA, S DAS, D MINKOFF, D MECHANICHAMILTON, S GLYNN, S PICKUP, W LIU, J GEE
NeuroImage  ·  15 Jan 2009  ·  doi:10.1016/J.NEUROIMAGE.2008.08.042
Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter
Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2009  ·  doi:10.1007/978-3-642-04271-3_57
Structure-Specific Statistical Mapping of White Matter Tracts
Structure-Specific Statistical Mapping of White Matter Tracts
Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee
Mathematics and Visualization  ·  01 Jan 2009  ·  doi:10.1007/978-3-540-88378-4_5
Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease
Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease
Suyash P. Awate, Paul Yushkevich, Zhuang Song, Daniel Licht, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2009  ·  doi:10.1007/978-3-642-02498-6_46
Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences
Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences
Suyash P. Awate, Paul Yushkevich, Daniel Licht, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2009  ·  doi:10.1007/978-3-642-04271-3_25

2008

Surface-based modeling of white matter fasciculi with orientation encoding
Surface-based modeling of white matter fasciculi with orientation encoding
Hui Zhang, Paul A. Yushkevich, Tony J Simon, James C. Gee
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 May 2008  ·  doi:10.1109/ISBI.2008.4541094
Spatial correspondence based asymmetry analysis in FMRI
Spatial correspondence based asymmetry analysis in FMRI
Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 May 2008  ·  doi:10.1109/ISBI.2008.4541071
Building an atlas of hippocampal subfields using postmortem MRI
Building an atlas of hippocampal subfields using postmortem MRI
Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 May 2008  ·  doi:10.1109/ISBI.2008.4540957
Branching medial models for cardiac shape representation
Branching medial models for cardiac shape representation
Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastian Ordas, James C. Gee, Paul A. Yushkevich
2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 May 2008  ·  doi:10.1109/ISBI.2008.4541289
Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI
Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI
Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2008  ·  doi:10.1007/978-3-540-85988-8_61
3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes
3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes
Suyash P. Awate, Lawrence Win, Paul Yushkevich, Robert T. Schultz, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2008  ·  doi:10.1007/978-3-540-85988-8_67

2007

High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis
High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis
Hui Zhang, B.B. Avants, P.A. Yushkevich, J.H. Woo, Sumei Wang, L.F. McCluskey, L.B. Elman, E.R. Melhem, J.C. Gee
IEEE Transactions on Medical Imaging  ·  01 Nov 2007  ·  doi:10.1109/TMI.2007.906784
Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis
Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis
Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee
IEEE Transactions on Medical Imaging  ·  01 Sep 2007  ·  doi:10.1109/TMI.2007.900322
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain
L. Ng, S.D. Pathak, Chihchau Kuan, C. Lau, Hongwei Dong, …, J.C. Gee, D. Haynor, E. Lein, A. Jones, M. Hawrylycz
IEEE/ACM Transactions on Computational Biology and Bioinformatics  ·  01 Jul 2007  ·  doi:10.1109/TCBB.2007.1035
Hippocampus-specific fMRI group activation analysis using the continuous medial representation
Hippocampus-specific fMRI group activation analysis using the continuous medial representation
Paul A. Yushkevich, John A. Detre, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Kathy Z. Tang, Angela Hoang, Marc Korczykowski, Hui Zhang, James C. Gee
NeuroImage  ·  01 May 2007  ·  doi:10.1016/J.NEUROIMAGE.2007.01.029
Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation
Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation
Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee
2007 IEEE 11th International Conference on Computer Vision  ·  01 Jan 2007  ·  doi:10.1109/ICCV.2007.4409169
NON-UNIFORM SMOOTHING IN HIPPOCAMPUS-SPECIFIC GROUP FMRI ANALYSIS
NON-UNIFORM SMOOTHING IN HIPPOCAMPUS-SPECIFIC GROUP FMRI ANALYSIS
Paul Yushkevich, John Detre, James Gee
2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro  ·  01 Jan 2007  ·  doi:10.1109/ISBI.2007.356878

2006

Continuous Medial Representation for Anatomical Structures
Continuous Medial Representation for Anatomical Structures
Paul A. Yushkevich, Hui Zhang, James C. Gee
IEEE Transactions on Medical Imaging  ·  01 Dec 2006  ·  doi:10.1109/TMI.2006.884634
Deformable registration of diffusion tensor MR images with explicit orientation optimization
Deformable registration of diffusion tensor MR images with explicit orientation optimization
H ZHANG, P YUSHKEVICH, D ALEXANDER, J GEE
Medical Image Analysis  ·  01 Oct 2006  ·  doi:10.1016/J.MEDIA.2006.06.004
User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability
User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability
Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee, Guido Gerig
NeuroImage  ·  01 Jul 2006  ·  doi:10.1016/J.NEUROIMAGE.2006.01.015
Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter
Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter
James C. Gee, Hui Zhang, Abraham Dubb, Brian B. Avants, Paul A. Yushkevich, Jeffrey T. Duda
Mathematics and Visualization  ·  01 Jan 2006  ·  doi:10.1007/3-540-31272-2_8
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach
Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2006  ·  doi:10.1007/11784012_28

2005

Regional Structural Characterization of the Brain of Schizophrenia Patients1
Regional Structural Characterization of the Brain of Schizophrenia Patients1
Paul Yushkevich, Abraham Dubb, Zhiyong Xie, Ruben Gur, Raquel Gur, James Gee
Academic Radiology  ·  01 Oct 2005  ·  doi:10.1016/J.ACRA.2005.06.014
Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation
Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation
Paul A. Yushkevich, Hui Zhang, James C. Gee
Lecture Notes in Computer Science  ·  01 Jan 2005  ·  doi:10.1007/11566489_89

2003

Deformable M-Reps for 3D Medical Image Segmentation
Deformable M-Reps for 3D Medical Image Segmentation
Stephen M. Pizer, P. Thomas Fletcher, Sarang Joshi, Andrew Thall, James Z. Chen, …, Conglin Lu, Keith E. Muller, Gregg Tracton, Paul Yushkevich, Edward L. Chaney
International Journal of Computer Vision  ·  01 Nov 2003  ·  doi:10.1023/A:1026313132218
Continuous medial representations for geometric object modeling in 2D and 3D
Continuous medial representations for geometric object modeling in 2D and 3D
Paul Yushkevich, P. Thomas Fletcher, Sarang Joshi, Andrew Thall, Stephen M. Pizer
Image and Vision Computing  ·  01 Jan 2003  ·  doi:10.1016/S0262-8856(02)00135-X

2002

Multiscale deformable model segmentation and statistical shape analysis using medial descriptions
Multiscale deformable model segmentation and statistical shape analysis using medial descriptions
S. Joshi, S. Pizer, P.T. Fletcher, P. Yushkevich, A. Thall, J.S. Marron
IEEE Transactions on Medical Imaging  ·  01 May 2002  ·  doi:10.1109/TMI.2002.1009389

1999

Segmentation, registration, and measurement of shape variation via image object shape
Segmentation, registration, and measurement of shape variation via image object shape
S.M. Pizer, D.S. Fritsch, P.A. Yushkevich, V.E. Johnson, E.L. Chaney
IEEE Transactions on Medical Imaging  ·  01 Jan 1999  ·  doi:10.1109/42.811263

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Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis
Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis
Hui Sun, P.A. Yushkevich, Hui Zhang, J.C. Gee, T.J. Simon
2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06)  ·  [no date info]  ·  doi:10.1109/CVPRW.2006.68
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